iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131009

UUCD1 version

UUC-ViV-00120

Ensembl Protein ID

VIT_14s0068g00410.t01

UniProt Accession

D7SVC1; D7SVC1_VITVI

Genbank Protein ID

CBI21220.3

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

FN595232

Gene Name

VIT_14s0068g00410

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_14s0068g00410	VIT_14s0068g00410.t01	VIT_14s0068g00410.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-35	118.1	362	396
UBD/Beta-Prp	1.20e-40	140.1	266	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++++++++   s  +l+s+s+Dg++++WDlrt 
   Q: 362  HTSWISACKWhnkSWFHLLSASYDGKVMLWDLRTA 396
           **********9643367***************986 PP

UBD/Beta-Prp

   S: 83   tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl... 166
            g+ v+t+ gh++ v s+ + +  +++ s+s+d  +r wd+etg+ + +++ g  ++ nc+ v +++  l+++G+ D+t+r+Wd    
   Q: 266  EGEAVSTIVGHTQCVSSVIWPQ-HETIYSASWDHSVRRWDVETGKDSWNLFCG--KALNCLDVGGESsALIAAGGSDTTLRIWDPrkp 350
           7899**************9988.9***********************845544..5699999999999****************9644 PP
   S: 167  ktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
            t + + ++++ ht+ +   +++ ++ ++l+s+s+dg+v lwdl+t   +     h++ v++ + + +++ +vsg++D  +
   Q: 351  GTLTPVFQFSS-HTSWISACKWHNKSwFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKVLCADWW-KGDSVVSGGADSKL 429
           44455566688.************999***************************************.9999*****99876 PP

Organism

Vitis vinifera

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MEIDGDVEET SRRVQVRFTT KLQSPFKTPP TSIAIPSNLT RMGLSAIVNN LLKSGNPDWK 60
PEPFDFLIDG ELVRMSLEQF LIAKGISAEK ILEIEYIKAV APRKQEEPSL HDDWVSAVDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCACCTGTG GATACTGAGA GGGAAAATCG GATATGGAGA TTGACGGAGA TGTTGAAGAG 60
ACGTCAAGGC GGGTGCAGGT GCGCTTCACC ACGAAGCTCC AGTCTCCGTT CAAGACTCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

vvi:100265290

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	67.36	6.00e-179	619.00
IUUC-Aml-001997	Ailuropoda melanoleuca	36.25	5.00e-58	217.00
IUUC-Atr-002544	Amborella trichopoda	64.77	8.00e-167	578.00
IUUC-Apl-003981	Anas platyrhynchos	36.07	7.00e-58	216.00
IUUC-Aca-004370	Anolis carolinensis	34.75	1.00e-63	236.00
IUUC-Aly-006455	Arabidopsis lyrata	73.33	0.00e+00	675.00
IUUC-Ath-006669	Arabidopsis thaliana	74.37	0.00e+00	664.00
IUUC-Ago-007864	Ashbya gossypii	32.60	2.00e-48	186.00
IUUC-Acl-008177	Aspergillus clavatus	32.16	2.00e-47	182.00
IUUC-Afl-008617	Aspergillus flavus	32.30	1.00e-45	176.00
IUUC-Afu-008752	Aspergillus fumigatus	30.79	6.00e-43	167.00
IUUC-Ani-009136	Aspergillus nidulans	33.67	5.00e-47	181.00
IUUC-Ang-009701	Aspergillus niger	33.25	7.00e-44	171.00
IUUC-Aor-009884	Aspergillus oryzae	32.54	4.00e-46	177.00
IUUC-Ame-011432	Astyanax mexicanus	35.32	4.00e-69	254.00
IUUC-Bgr-012218	Blumeria graminis	30.97	1.00e-41	163.00
IUUC-Bta-012829	Bos taurus	35.00	2.00e-59	222.00
IUUC-Bci-013953	Botrytis cinerea	30.46	4.00e-43	167.00
IUUC-Bdi-014351	Brachypodium distachyon	68.51	2.00e-176	611.00
IUUC-Bol-016514	Brassica oleracea	71.49	3.00e-177	613.00
IUUC-Bra-016988	Brassica rapa	71.49	1.00e-177	615.00
IUUC-Cel-018569	Caenorhabditis elegans	24.77	1.00e-27	116.00
IUUC-Cja-019468	Callithrix jacchus	35.95	9.00e-58	216.00
IUUC-Cfa-020471	Canis familiaris	35.00	8.00e-56	210.00
IUUC-Cpo-022260	Cavia porcellus	35.71	1.00e-58	219.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.11	7.00e-67	246.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.71	1.00e-57	216.00
IUUC-Cho-024426	Choloepus hoffmanni	35.00	5.00e-44	171.00
IUUC-Cin-025789	Ciona intestinalis	27.34	6.00e-47	180.00
IUUC-Cne-027063	Cryptococcus neoformans	28.05	2.00e-32	132.00
IUUC-Dre-027907	Danio rerio	35.56	3.00e-69	254.00
IUUC-Dno-029225	Dasypus novemcinctus	35.48	3.00e-59	221.00
IUUC-Dor-031082	Dipodomys ordii	28.72	2.00e-34	139.00
IUUC-Dse-031308	Dothistroma septosporum	32.23	3.00e-49	188.00
IUUC-Dme-032189	Drosophila melanogaster	31.32	7.00e-48	183.00
IUUC-Ete-032247	Echinops telfairi	33.10	9.00e-52	196.00
IUUC-Eca-034285	Equus caballus	35.00	2.00e-58	218.00
IUUC-Eeu-035322	Erinaceus europaeus	31.19	6.00e-48	183.00
IUUC-Fca-036114	Felis catus	35.24	1.00e-58	219.00
IUUC-Fal-036891	Ficedula albicollis	35.82	1.00e-52	199.00
IUUC-Fox-037965	Fusarium oxysporum	26.88	3.00e-35	141.00
IUUC-Fso-038244	Fusarium solani	26.58	2.00e-33	135.00
IUUC-Gmo-039040	Gadus morhua	34.97	3.00e-69	254.00
IUUC-Ggr-040093	Gaeumannomyces graminis	27.25	7.00e-31	127.00
IUUC-Gga-040610	Gallus gallus	34.05	3.00e-60	224.00
IUUC-Gac-042117	Gasterosteus aculeatus	35.07	2.00e-66	245.00
IUUC-Gma-043756	Glycine max	73.78	0.00e+00	674.00
IUUC-Ggo-045179	Gorilla gorilla	35.71	1.00e-58	219.00
IUUC-Hsa-046114	Homo sapiens	35.71	8.00e-58	216.00
IUUC-Hvu-047331	Hordeum vulgare	68.42	4.00e-159	553.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	34.76	1.00e-58	219.00
IUUC-Kpa-049304	Komagataella pastoris	30.92	2.00e-49	188.00
IUUC-Lch-050655	Latimeria chalumnae	33.91	3.00e-45	174.00
IUUC-Lpe-051675	Leersia perrieri	66.06	6.00e-176	609.00
IUUC-Loc-052868	Lepisosteus oculatus	35.71	5.00e-65	240.00
IUUC-Lma-053258	Leptosphaeria maculans	32.78	9.00e-45	175.00
IUUC-Laf-053993	Loxodonta africana	35.00	2.00e-59	222.00
IUUC-Mcc-055128	Macaca mulatta	29.83	4.00e-37	147.00
IUUC-Meu-056501	Macropus eugenii	37.01	2.00e-49	188.00
IUUC-Mor-057114	Magnaporthe oryzae	28.88	1.00e-41	163.00
IUUC-Mpo-057463	Magnaporthe poae	34.19	5.00e-17	80.10
IUUC-Mtr-058367	Medicago truncatula	69.63	3.00e-180	623.00
IUUC-Mla-059107	Melampsora laricipopulina	29.40	7.00e-42	164.00
IUUC-Mga-059745	Meleagris gallopavo	35.64	4.00e-59	221.00
IUUC-Mvi-060362	Microbotryum violaceum	25.94	1.00e-32	133.00
IUUC-Mdo-062257	Monodelphis domestica	34.76	3.00e-61	228.00
IUUC-Mmu-063546	Mus musculus	33.88	2.00e-58	218.00
IUUC-Mac-065540	Musa acuminata	68.78	1.00e-178	618.00
IUUC-Mpu-066284	Mustela putorius furo	35.24	3.00e-59	221.00
IUUC-Mlu-067241	Myotis lucifugus	35.48	3.00e-59	221.00
IUUC-Nfi-068260	Neosartorya fischeri	31.10	3.00e-44	172.00
IUUC-Ncr-068719	Neurospora crassa	27.38	8.00e-36	144.00
IUUC-Nle-068981	Nomascus leucogenys	35.24	8.00e-57	213.00
IUUC-Opr-071218	Ochotona princeps	33.33	2.00e-54	205.00
IUUC-Ont-071646	Oreochromis niloticus	34.52	3.00e-62	231.00
IUUC-Oan-073453	Ornithorhynchus anatinus	35.24	6.00e-69	253.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.24	1.00e-59	223.00
IUUC-Oba-075712	Oryza barthii	57.18	6.00e-140	489.00
IUUC-Obr-076721	Oryza brachyantha	66.44	1.00e-175	608.00
IUUC-Ogl-077229	Oryza glaberrima	66.97	2.00e-178	617.00
IUUC-Ogu-078977	Oryza glumaepatula	57.41	2.00e-140	491.00
IUUC-Oin-079683	Oryza indica	67.20	1.00e-178	618.00
IUUC-Olo-080291	Oryza longistaminata	57.70	1.00e-97	348.00
IUUC-Ome-081834	Oryza meridionalis	68.30	2.00e-178	617.00
IUUC-Oni-082507	Oryza nivara	64.91	3.00e-168	583.00
IUUC-Opu-083396	Oryza punctata	66.06	7.00e-177	612.00
IUUC-Oru-085220	Oryza rufipogon	64.68	4.00e-168	583.00
IUUC-Osa-085767	Oryza sativa	67.20	1.00e-178	618.00
IUUC-Ola-087420	Oryzias latipes	34.37	2.00e-67	248.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.57	1.00e-61	229.00
IUUC-Oga-088264	Otolemur garnettii	34.29	2.00e-56	211.00
IUUC-Oar-089335	Ovis aries	35.24	7.00e-60	223.00
IUUC-Ptr-091320	Pan troglodytes	35.71	8.00e-58	216.00
IUUC-Pan-092833	Papio anubis	35.95	8.00e-58	216.00
IUUC-Psi-093504	Pelodiscus sinensis	34.52	1.00e-57	216.00
IUUC-Pma-094189	Petromyzon marinus	35.63	5.00e-61	227.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.43	9.00e-41	160.00
IUUC-Ppa-095429	Physcomitrella patens	52.94	2.00e-125	441.00
IUUC-Pfo-096337	Poecilia formosa	35.07	5.00e-67	247.00
IUUC-Pab-097571	Pongo abelii	35.95	6.00e-58	217.00
IUUC-Pop-099977	Populus trichocarpa	75.06	0.00e+00	674.00
IUUC-Pca-100394	Procavia capensis	34.00	6.00e-49	187.00
IUUC-Ppe-101848	Prunus persica	73.21	0.00e+00	673.00
IUUC-Pva-102921	Pteropus vampyrus	33.92	4.00e-26	111.00
IUUC-Pgr-103637	Puccinia graminis	28.81	1.00e-41	163.00
IUUC-Ptt-103781	Puccinia triticina	27.41	2.00e-40	159.00
IUUC-Pte-104135	Pyrenophora teres	31.88	2.00e-42	167.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	31.62	3.00e-46	178.00
IUUC-Rno-105114	Rattus norvegicus	34.76	2.00e-58	218.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.25	9.00e-48	183.00
IUUC-Sha-107122	Sarcophilus harrisii	36.56	7.00e-61	226.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	26.35	2.00e-40	159.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.38	4.00e-40	157.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	31.26	9.00e-47	180.00
IUUC-Smo-108720	Selaginella moellendorffii	49.19	2.00e-119	421.00
IUUC-Sit-110354	Setaria italica	66.67	1.00e-177	615.00
IUUC-Sly-111023	Solanum lycopersicum	69.36	0.00e+00	640.00
IUUC-Stu-112778	Solanum tuberosum	76.66	0.00e+00	680.00
IUUC-Sar-113596	Sorex araneus	32.61	3.00e-43	168.00
IUUC-Sbi-114193	Sorghum bicolor	65.30	1.00e-167	581.00
IUUC-Sre-115002	Sporisorium reilianum	30.45	1.00e-20	94.00
IUUC-Ssc-116066	Sus scrofa	35.24	3.00e-59	221.00
IUUC-Tgu-117048	Taeniopygia guttata	35.54	2.00e-56	212.00
IUUC-Tsy-119573	Tarsius syrichta	24.21	4.00e-20	91.30
IUUC-Tni-119820	Tetraodon nigroviridis	36.26	3.00e-63	234.00
IUUC-Tca-121605	Theobroma cacao	76.03	0.00e+00	692.00
IUUC-Tre-121947	Trichoderma reesei	26.86	6.00e-37	147.00
IUUC-Tvi-122481	Trichoderma virens	26.09	1.00e-36	146.00
IUUC-Tae-123504	Triticum aestivum	67.82	4.00e-180	623.00
IUUC-Tur-126586	Triticum urartu	68.42	5.00e-166	576.00
IUUC-Tme-126900	Tuber melanosporum	30.25	3.00e-50	191.00
IUUC-Tbe-127736	Tupaia belangeri	34.71	7.00e-23	100.00
IUUC-Ttr-129041	Tursiops truncatus	30.00	2.00e-41	162.00
IUUC-Uma-129628	Ustilago maydis	28.40	4.00e-11	62.00
IUUC-Vpa-130260	Vicugna pacos	35.48	8.00e-60	223.00
IUUC-Xtr-132083	Xenopus tropicalis	35.71	6.00e-63	233.00
IUUC-Xma-133094	Xiphophorus maculatus	34.20	1.00e-65	243.00
IUUC-Yli-134531	Yarrowia lipolytica	28.57	1.00e-38	153.00
IUUC-Zma-135509	Zea mays	66.74	2.00e-177	614.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence