iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099140

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000355

Gene Name

POPTRDRAFT_826268; POPTR_0019s11710g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0019s11710	POPTR_0019s11710.1	POPTR_0019s11710.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-49	162.7	101	136
UBD/Beta-Prp	1.70e-70	238.7	48	228

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH+dsv+claf sd  ll+sG+ Dg +++WD ++g+
   Q: 101  GHKDSVSCLAFsSDgQLLASGGFDGLVQIWDASSGN 136
           8***********999****************88776 PP

UBD/Beta-Prp

   S: 82   stgkcvhtlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkl 171
           +t + +h+++gh+ +++++s sp++   +++G+ d+   +w++  g + +  l+gh+++v+c+++++dg+ll+sG+ D+ v++Wd ++g+ 
   Q: 48   DTDDSMHIFTGHTGELYTVSCSPTDpLLVATGGGDDKGFLWKIGLGDWAS-ELKGHKDSVSCLAFSSDGQLLASGGFDGLVQIWDASSGNH 137
           577899*****************99566679******************9.**************************************** PP
   S: 172  lrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
              l+g  ++ ++++ ++++g  +++gs+d++v +w+  +g  +++++gh++ v++ +f+p+++ + +gs+D s+riW+ +sg++++++ +
   Q: 138  KCVLEG-PDEGIEWVRWHPKGHLVLAGSEDKSVWMWNADRGAYLNSFTGHEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRG 227
           *****9.*******************************************************************************99987 PP
   S: 263  h 263
           h
   Q: 228  H 228
           6 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNGPNRSLHD EEEDDQGEVF LDDSDIIDEV AVDEEDLPDA DEDDDDDDTD DSMHIFTGHT 60
GELYTVSCSP TDPLLVATGG GDDKGFLWKI GLGDWASELK GHKDSVSCLA FSSDGQLLAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAACTGCAAT AACGATAATA GGAATAAAAC CCTAGCTAAA ACCTCTCATT CTTCTCCAGC 60
AGACGACGCC AAGGAATCGG CAAACACAGA AATACAAATA AAAAACACAA AAATGAATGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

pop:POPTR_0019s11710g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001781	Ailuropoda melanoleuca	34.30	2.00e-57	215.00
IUUC-Aca-004594	Anolis carolinensis	35.76	4.00e-57	214.00
IUUC-Ath-007701	Arabidopsis thaliana	70.76	1.00e-147	515.00
IUUC-Ame-011651	Astyanax mexicanus	31.41	2.00e-48	185.00
IUUC-Bta-012833	Bos taurus	34.88	2.00e-58	219.00
IUUC-Cja-019433	Callithrix jacchus	34.88	4.00e-58	218.00
IUUC-Cfa-020093	Canis familiaris	34.88	2.00e-58	219.00
IUUC-Cpo-021742	Cavia porcellus	34.88	3.00e-58	218.00
IUUC-Csa-023498	Chlorocebus sabaeus	34.88	2.00e-58	219.00
IUUC-Cho-024628	Choloepus hoffmanni	35.64	6.00e-46	177.00
IUUC-Cin-025244	Ciona intestinalis	34.21	9.00e-53	200.00
IUUC-Csv-026218	Ciona savignyi	34.51	3.00e-50	191.00
IUUC-Dre-028528	Danio rerio	36.28	2.00e-55	209.00
IUUC-Dno-029297	Dasypus novemcinctus	34.88	3.00e-58	218.00
IUUC-Ete-033100	Echinops telfairi	39.51	3.00e-40	158.00
IUUC-Eca-034277	Equus caballus	34.88	4.00e-58	218.00
IUUC-Fca-036115	Felis catus	34.88	3.00e-58	218.00
IUUC-Fal-036864	Ficedula albicollis	36.05	3.00e-61	228.00
IUUC-Fox-037829	Fusarium oxysporum	31.41	4.00e-36	145.00
IUUC-Gmo-039090	Gadus morhua	32.36	2.00e-40	159.00
IUUC-Gga-040545	Gallus gallus	36.05	5.00e-61	228.00
IUUC-Gac-042027	Gasterosteus aculeatus	36.95	8.00e-63	233.00
IUUC-Ggo-045036	Gorilla gorilla	34.88	4.00e-58	218.00
IUUC-Hsa-046749	Homo sapiens	34.88	4.00e-58	218.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	34.88	3.00e-58	218.00
IUUC-Lch-049747	Latimeria chalumnae	32.78	9.00e-48	183.00
IUUC-Loc-052406	Lepisosteus oculatus	37.13	6.00e-62	230.00
IUUC-Laf-053901	Loxodonta africana	34.88	4.00e-58	218.00
IUUC-Mcc-054990	Macaca mulatta	34.88	5.00e-58	217.00
IUUC-Meu-056844	Macropus eugenii	36.05	4.00e-56	211.00
IUUC-Mpo-057414	Magnaporthe poae	30.29	1.00e-34	140.00
IUUC-Mtr-057759	Medicago truncatula	69.25	2.00e-133	468.00
IUUC-Mla-058856	Melampsora laricipopulina	33.24	9.00e-50	190.00
IUUC-Mga-059749	Meleagris gallopavo	36.05	6.00e-61	227.00
IUUC-Mvi-060237	Microbotryum violaceum	31.65	2.00e-53	202.00
IUUC-Mmr-061270	Microcebus murinus	33.24	6.00e-55	207.00
IUUC-Mdo-062965	Monodelphis domestica	34.30	2.00e-56	213.00
IUUC-Mmu-064081	Mus musculus	35.17	6.00e-59	221.00
IUUC-Mpu-066355	Mustela putorius furo	34.88	3.00e-58	218.00
IUUC-Mlu-067630	Myotis lucifugus	35.07	2.00e-57	215.00
IUUC-Ncr-068753	Neurospora crassa	30.41	2.00e-32	133.00
IUUC-Nle-069701	Nomascus leucogenys	34.88	3.00e-58	218.00
IUUC-Opr-070337	Ochotona princeps	34.56	2.00e-48	186.00
IUUC-Ont-072614	Oreochromis niloticus	35.78	2.00e-60	226.00
IUUC-Ocu-073912	Oryctolagus cuniculus	35.17	1.00e-58	219.00
IUUC-Ola-087164	Oryzias latipes	36.36	2.00e-60	225.00
IUUC-Oga-088864	Otolemur garnettii	34.88	3.00e-58	218.00
IUUC-Oar-090115	Ovis aries	34.88	4.00e-58	218.00
IUUC-Ptr-091398	Pan troglodytes	34.88	4.00e-58	218.00
IUUC-Pan-092002	Papio anubis	34.88	4.00e-58	218.00
IUUC-Pma-094618	Petromyzon marinus	31.71	3.00e-50	191.00
IUUC-Ppa-095351	Physcomitrella patens	59.10	1.00e-117	416.00
IUUC-Pfo-097078	Poecilia formosa	36.07	2.00e-60	225.00
IUUC-Pab-098540	Pongo abelii	34.88	3.00e-58	218.00
IUUC-Pca-101072	Procavia capensis	34.72	2.00e-55	209.00
IUUC-Ppe-101979	Prunus persica	73.85	5.00e-168	583.00
IUUC-Pva-102400	Pteropus vampyrus	29.94	2.00e-43	169.00
IUUC-Rno-105672	Rattus norvegicus	34.88	2.00e-58	219.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	31.69	8.00e-50	190.00
IUUC-Spo-108208	Schizosaccharomyces pombe	30.21	1.00e-50	193.00
IUUC-Smo-109093	Selaginella moellendorffii	52.47	5.00e-107	380.00
IUUC-Sly-111316	Solanum lycopersicum	73.75	1.00e-153	535.00
IUUC-Stu-111956	Solanum tuberosum	73.16	1.00e-152	531.00
IUUC-Ssc-116045	Sus scrofa	31.67	2.00e-42	166.00
IUUC-Tgu-117514	Taeniopygia guttata	35.76	9.00e-61	226.00
IUUC-Tru-117851	Takifugu rubripes	34.58	5.00e-59	221.00
IUUC-Tsy-119140	Tarsius syrichta	32.37	7.00e-50	190.00
IUUC-Tni-120248	Tetraodon nigroviridis	35.99	3.00e-61	228.00
IUUC-Tca-121686	Theobroma cacao	71.59	6.00e-145	506.00
IUUC-Tme-127079	Tuber melanosporum	33.69	2.00e-17	83.20
IUUC-Ttr-128182	Tursiops truncatus	34.59	1.00e-57	216.00
IUUC-Vda-129718	Verticillium dahliae	30.39	8.00e-32	131.00
IUUC-Vpa-130605	Vicugna pacos	32.90	5.00e-44	171.00
IUUC-Vvi-131319	Vitis vinifera	71.83	2.00e-164	571.00
IUUC-Xtr-132193	Xenopus tropicalis	35.92	3.00e-62	231.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence