iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131112

UUCD1 version

UUC-ViV-00514

Ensembl Protein ID

VIT_18s0001g14390.t01

UniProt Accession

F6H1L3; F6H1L3_VITVI

Genbank Protein ID

CCB46041.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

FN595227

Gene Name

VIT_18s0001g14390

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_18s0001g14390	VIT_18s0001g14390.t01	VIT_18s0001g14390.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.00e-26	92.4	518	588
E3 adaptor/Cullin RING/DCX/DWD	6.60e-08	33.2	1253	1283

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawcee 71
           +p++f+CpI++++++d v+l++G+ty+r++I++wl++g++tcP+trqpl+ ++l + n++l+rli  w e+
   Q: 518  PPKDFVCPITGQIFSDAVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSASSLpKTNYVLKRLITTWKEQ 588
           699*****************************************************************987 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDl 30
           Ht  vtcl +  s+ + l sGs D+ti+vW +
   Q: 1253 HTKAVTCL-YasSSsDKLYSGSLDKTIRVWTV 1283
           999*****.77844699*************75 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MAGNYRFAMD QKDIVRFLVT TVGSFIQDQL INKEQRAQHK EQCAERLAAE DGSCEKDTEV 60
RYSDQAVLAN LDWGIDALEE AINTSNMETK LARLDHAEKM LQVCAMLNSD QRTAGVPNFY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGGAA ACTACAGGTT TGCAATGGAC CAAAAGGATA TCGTTAGATT CCTGGTCACC 60
ACGGTTGGAA GTTTCATCCA AGATCAGTTG ATCAATAAAG AACAGAGAGC CCAACACAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

vvi:100245471

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Mtr-057843	Medicago truncatula	65.11	0.00e+00	1837.00
IUUC-Opu-083775	Oryza punctata	37.66	9.00e-146	510.00
IUUC-Pop-099454	Populus trichocarpa	66.73	0.00e+00	1949.00
IUUC-Ppe-101141	Prunus persica	70.50	0.00e+00	2092.00
IUUC-Smo-109545	Selaginella moellendorffii	38.22	2.00e-167	583.00
IUUC-Sly-111208	Solanum lycopersicum	64.43	0.00e+00	1903.00
IUUC-Stu-112377	Solanum tuberosum	63.81	0.00e+00	1836.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence