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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Sce-106340
UUCD1 version UUC-SaC-00100
Ensembl Protein ID YLL011W
UniProt Accession P33750; D6VXZ1; DCA13_YEAST
Genbank Protein ID CAA49658.1; CAA62781.1; CAA97455.1; DAA09307.1
Protein Name Protein SOF1; U3 small nucleolar RNA-associated protein SOF1
Genbank Nucleotide ID X70052; X91488; Z73116; BK006945
Gene Name SOF1; YLL011W; L1339
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YLL011W YLL011W YLL011W
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
CPLMdbPAFBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.30e-33 109.9 351 376
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 6    vtclaf..sdtllvsGsdDgtikvWD 29
           v+ +++  ++++++sGsdDg++++W+
   Q: 351  VFQVKYsmDSKYIISGSDDGNVRLWR 376
           7888888644***************8 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Required for ribosomal RNA processing.
 Required for ribosomal RNA processing.
Protein Sequence
(Fasta)
MKIKTIKRSA DDYVPVKSTQ ESQMPRNLNP ELHPFERARE YTKALNATKL ERMFAKPFVG 60
QLGYGHRDGV YAIAKNYGSL NKLATGSADG VIKYWNMSTR EEFVSFKAHY GLVTGLCVTQ 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106340|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGAAGATTA AGACCATTAA AAGAAGTGCT GATGACTATG TCCCTGTTAA AAGTACGCAG 60
GAATCTCAAA TGCCCAGGAA TTTGAACCCT GAATTGCATC CTTTTGAAAG GGCACGTGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106340|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR007287--Sof1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04158--Sof1
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0031167--P:rRNA methylation
KEGG sce:YLL011W
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002178 Ailuropoda melanoleuca 44.97 1.00e-118 417.00
IUUC-Atr-002799 Amborella trichopoda 46.98 3.00e-118 416.00
IUUC-Apl-003675 Anas platyrhynchos 45.20 2.00e-118 417.00
IUUC-Aca-004792 Anolis carolinensis 46.47 1.00e-124 437.00
IUUC-Aly-005998 Arabidopsis lyrata 44.97 1.00e-117 414.00
IUUC-Ath-007526 Arabidopsis thaliana 45.13 2.00e-115 406.00
IUUC-Ago-007774 Ashbya gossypii 77.73 0.00e+00 783.00
IUUC-Acl-008024 Aspergillus clavatus 52.65 6.00e-140 488.00
IUUC-Afu-008930 Aspergillus fumigatus 50.82 3.00e-136 476.00
IUUC-Ani-009370 Aspergillus nidulans 52.44 4.00e-140 489.00
IUUC-Ang-009827 Aspergillus niger 51.80 1.00e-137 480.00
IUUC-Aor-010060 Aspergillus oryzae 52.87 6.00e-135 471.00
IUUC-Ate-010434 Aspergillus terreus 53.11 6.00e-117 411.00
IUUC-Ame-011967 Astyanax mexicanus 46.29 9.00e-122 427.00
IUUC-Bgr-011989 Blumeria graminis 49.36 4.00e-132 462.00
IUUC-Bta-013291 Bos taurus 33.88 3.00e-74 270.00
IUUC-Bci-013868 Botrytis cinerea 48.72 5.00e-132 462.00
IUUC-Bdi-014343 Brachypodium distachyon 44.42 1.00e-111 394.00
IUUC-Bol-015740 Brassica oleracea 45.90 3.00e-111 393.00
IUUC-Bra-016689 Brassica rapa 45.90 5.00e-111 392.00
IUUC-Cel-018536 Caenorhabditis elegans 36.72 5.00e-81 292.00
IUUC-Cja-018779 Callithrix jacchus 45.61 3.00e-122 429.00
IUUC-Cfa-020105 Canis familiaris 45.61 7.00e-122 428.00
IUUC-Cpo-021538 Cavia porcellus 44.97 4.00e-120 422.00
IUUC-Cre-022798 Chlamydomonas reinhardtii 52.44 6.00e-45 171.00
IUUC-Csa-023492 Chlorocebus sabaeus 45.82 8.00e-123 431.00
IUUC-Cho-024497 Choloepus hoffmanni 41.46 1.00e-73 268.00
IUUC-Cin-025524 Ciona intestinalis 44.85 2.00e-114 403.00
IUUC-Csv-026197 Ciona savignyi 42.80 6.00e-111 392.00
IUUC-Cgl-026745 Colletotrichum gloeosporioides 49.68 9.00e-126 441.00
IUUC-Cne-026840 Cryptococcus neoformans 35.73 4.00e-79 288.00
IUUC-Cme-027111 Cyanidioschyzon merolae 33.70 1.00e-73 268.00
IUUC-Dre-027471 Danio rerio 46.67 6.00e-123 431.00
IUUC-Dno-029790 Dasypus novemcinctus 46.92 1.00e-100 357.00
IUUC-Dor-030971 Dipodomys ordii 36.40 3.00e-86 310.00
IUUC-Dse-031563 Dothistroma septosporum 52.65 9.00e-138 481.00
IUUC-Dme-032161 Drosophila melanogaster 43.87 8.00e-113 398.00
IUUC-Ete-033127 Echinops telfairi 42.64 1.00e-110 391.00
IUUC-Eca-033531 Equus caballus 46.86 2.00e-119 420.00
IUUC-Eeu-034663 Erinaceus europaeus 40.47 2.00e-100 357.00
IUUC-Fca-036258 Felis catus 45.82 2.00e-122 430.00
IUUC-Fal-037456 Ficedula albicollis 45.09 6.00e-119 418.00
IUUC-Fox-038025 Fusarium oxysporum 48.72 2.00e-124 437.00
IUUC-Fso-038344 Fusarium solani 47.18 2.00e-114 403.00
IUUC-Gmo-039643 Gadus morhua 45.40 3.00e-120 422.00
IUUC-Ggr-039816 Gaeumannomyces graminis 48.65 1.00e-123 434.00
IUUC-Gga-040143 Gallus gallus 45.73 9.00e-124 434.00
IUUC-Gac-041665 Gasterosteus aculeatus 44.99 3.00e-123 432.00
IUUC-Gma-043073 Glycine max 44.21 1.00e-113 400.00
IUUC-Ggo-045058 Gorilla gorilla 45.61 5.00e-123 432.00
IUUC-Hsa-046843 Homo sapiens 45.61 2.00e-122 431.00
IUUC-Hvu-047654 Hordeum vulgare 48.13 5.00e-71 259.00
IUUC-Itr-048822 Ictidomys tridecemlineatus 46.04 1.00e-123 434.00
IUUC-Kpa-049232 Komagataella pastoris 65.74 0.00e+00 661.00
IUUC-Lch-050542 Latimeria chalumnae 46.97 3.00e-122 429.00
IUUC-Lpe-051622 Leersia perrieri 43.25 1.00e-112 397.00
IUUC-Loc-052674 Lepisosteus oculatus 46.70 4.00e-124 436.00
IUUC-Lma-053108 Leptosphaeria maculans 48.83 3.00e-132 462.00
IUUC-Laf-053385 Loxodonta africana 45.61 3.00e-121 426.00
IUUC-Mcc-055151 Macaca mulatta 45.61 2.00e-122 429.00
IUUC-Meu-056230 Macropus eugenii 42.49 6.00e-53 199.00
IUUC-Mor-057013 Magnaporthe oryzae 46.99 5.00e-119 419.00
IUUC-Mpo-057530 Magnaporthe poae 48.21 2.00e-123 433.00
IUUC-Mtr-058187 Medicago truncatula 44.44 2.00e-113 400.00
IUUC-Mla-058964 Melampsora laricipopulina 37.69 5.00e-97 345.00
IUUC-Mga-059712 Meleagris gallopavo 46.74 3.00e-120 423.00
IUUC-Mvi-060370 Microbotryum violaceum 35.32 1.00e-94 337.00
IUUC-Mmr-061340 Microcebus murinus 44.54 1.00e-115 407.00
IUUC-Mdo-062978 Monodelphis domestica 45.61 2.00e-124 436.00
IUUC-Mmu-063439 Mus musculus 45.82 3.00e-123 432.00
IUUC-Mac-065129 Musa acuminata 43.10 2.00e-115 407.00
IUUC-Mpu-066548 Mustela putorius furo 43.58 2.00e-95 340.00
IUUC-Mlu-067660 Myotis lucifugus 45.40 7.00e-122 428.00
IUUC-Nfi-068455 Neosartorya fischeri 53.09 1.00e-140 491.00
IUUC-Ncr-068848 Neurospora crassa 49.11 7.00e-125 438.00
IUUC-Nle-069923 Nomascus leucogenys 45.40 2.00e-122 430.00
IUUC-Opr-070279 Ochotona princeps 38.50 2.00e-36 144.00
IUUC-Ont-072234 Oreochromis niloticus 46.34 3.00e-125 439.00
IUUC-Oan-073713 Ornithorhynchus anatinus 41.20 3.00e-45 172.00
IUUC-Ocu-073782 Oryctolagus cuniculus 46.47 5.00e-124 435.00
IUUC-Oba-075161 Oryza barthii 43.04 5.00e-113 399.00
IUUC-Obr-076868 Oryza brachyantha 43.25 8.00e-113 398.00
IUUC-Ogl-077062 Oryza glaberrima 43.04 5.00e-113 399.00
IUUC-Ogu-078308 Oryza glumaepatula 43.04 5.00e-113 399.00
IUUC-Oin-079378 Oryza indica 43.04 5.00e-113 399.00
IUUC-Olo-080638 Oryza longistaminata 40.90 4.00e-102 362.00
IUUC-Oni-082368 Oryza nivara 43.04 5.00e-113 399.00
IUUC-Opu-083628 Oryza punctata 43.04 5.00e-113 399.00
IUUC-Oru-085226 Oryza rufipogon 42.83 2.00e-112 397.00
IUUC-Osa-085368 Oryza sativa 37.55 3.00e-56 209.00
IUUC-Ola-086836 Oryzias latipes 46.68 3.00e-127 446.00
IUUC-Olu-087755 Ostreococcus lucimarinus 42.76 2.00e-109 387.00
IUUC-Oga-088170 Otolemur garnettii 45.61 2.00e-123 433.00
IUUC-Oar-089388 Ovis aries 46.90 7.00e-124 435.00
IUUC-Ptr-090494 Pan troglodytes 45.61 2.00e-122 431.00
IUUC-Pan-091697 Papio anubis 45.82 5.00e-123 432.00
IUUC-Psi-093916 Pelodiscus sinensis 44.75 1.00e-119 421.00
IUUC-Pno-095004 Phaeosphaeria nodorum 48.57 4.00e-123 432.00
IUUC-Ppa-095514 Physcomitrella patens 45.18 1.00e-122 431.00
IUUC-Pfo-097432 Poecilia formosa 46.33 2.00e-122 430.00
IUUC-Pab-098423 Pongo abelii 45.82 7.00e-123 431.00
IUUC-Pop-099649 Populus trichocarpa 43.92 4.00e-115 405.00
IUUC-Pca-100365 Procavia capensis 43.04 9.00e-113 398.00
IUUC-Ppe-101379 Prunus persica 44.33 5.00e-114 402.00
IUUC-Pva-102845 Pteropus vampyrus 46.25 4.00e-120 423.00
IUUC-Pgr-103469 Puccinia graminis 35.32 2.00e-94 337.00
IUUC-Ptt-103980 Puccinia triticina 33.40 4.00e-75 273.00
IUUC-Pte-104111 Pyrenophora teres 49.30 1.00e-124 437.00
IUUC-Pyt-104610 Pyrenophora triticirepentis 49.53 2.00e-124 436.00
IUUC-Rno-105082 Rattus norvegicus 45.82 1.00e-123 434.00
IUUC-Sha-106584 Sarcophilus harrisii 45.61 4.00e-124 436.00
IUUC-Sja-107703 Schizosaccharomyces japonicus 53.83 3.00e-133 466.00
IUUC-Spo-108046 Schizosaccharomyces pombe 51.49 5.00e-135 472.00
IUUC-Ssl-108574 Sclerotinia sclerotiorum 49.36 1.00e-132 464.00
IUUC-Smo-109548 Selaginella moellendorffii 44.02 1.00e-121 427.00
IUUC-Sit-110242 Setaria italica 42.61 1.00e-109 387.00
IUUC-Sly-111762 Solanum lycopersicum 45.07 3.00e-110 389.00
IUUC-Stu-112156 Solanum tuberosum 44.96 2.00e-110 390.00
IUUC-Sbi-114739 Sorghum bicolor 44.88 1.00e-111 394.00
IUUC-Sre-114951 Sporisorium reilianum 40.04 2.00e-109 387.00
IUUC-Ssc-115510 Sus scrofa 45.61 2.00e-120 423.00
IUUC-Tgu-117234 Taeniopygia guttata 46.07 5.00e-116 409.00
IUUC-Tru-117986 Takifugu rubripes 44.80 1.00e-122 431.00
IUUC-Tsy-119252 Tarsius syrichta 45.82 2.00e-112 397.00
IUUC-Tni-119785 Tetraodon nigroviridis 45.25 2.00e-119 420.00
IUUC-Tca-121222 Theobroma cacao 45.24 2.00e-114 403.00
IUUC-Tre-122243 Trichoderma reesei 48.72 5.00e-127 445.00
IUUC-Tvi-122293 Trichoderma virens 47.65 5.00e-125 439.00
IUUC-Tae-125191 Triticum aestivum 43.14 2.00e-104 370.00
IUUC-Tur-126098 Triticum urartu 42.66 7.00e-100 355.00
IUUC-Tme-127200 Tuber melanosporum 55.68 1.00e-156 544.00
IUUC-Tbe-127568 Tupaia belangeri 42.74 1.00e-57 215.00
IUUC-Ttr-129185 Tursiops truncatus 38.97 2.00e-96 344.00
IUUC-Uma-129353 Ustilago maydis 40.45 7.00e-110 388.00
IUUC-Vda-129768 Verticillium dahliae 49.68 7.00e-128 448.00
IUUC-Vpa-130572 Vicugna pacos 45.82 1.00e-121 427.00
IUUC-Vvi-131555 Vitis vinifera 45.12 4.00e-113 399.00
IUUC-Xtr-132263 Xenopus tropicalis 49.61 2.00e-107 380.00
IUUC-Xma-133925 Xiphophorus maculatus 46.77 1.00e-122 431.00
IUUC-Yli-134384 Yarrowia lipolytica 54.53 6.00e-152 528.00
IUUC-Zma-135616 Zea mays 42.61 3.00e-110 390.00
Created Date 25-Jun-2017

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