iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-014552

UUCD1 version

UUC-BrD-01249

Ensembl Protein ID

BRADI3G29861.2

UniProt Accession

I1I524; I1I524_BRADI

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Gene Name

LOC100824810

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI3G29861	BRADI3G29861.1	BRADI3G29861.1
BRADI3G29861	BRADI3G29861.2	BRADI3G29861.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-35	119.4	177	212
UBD/Beta-Prp	1.90e-55	188.7	7	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++v+cl+f +   ll++Gs D+t+k WDl t+ l
   Q: 177  HEGPVNCLDFhPHeFLLATGSADKTVKFWDLETFEL 212
           9*********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsls 101
           +h s ++c kf  + +++l+tg++d++i +w v +++++ slsg +++v +v+f++++ ++  g+  +tik+wd++  k v+t++gh ++ +sl+
   Q: 7    AHGSDVNCAKFgRQTSRVLITGGDDQKINLWAVGKPSAILSLSGLTSPVESVSFDSSEVMIGAGAASGTIKIWDIEEAKVVRTFTGHRSNCVSLD 101
           67888999*************************************************9888899999**************************** PP
   S: 102  fspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
           f+p g++++sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG++D+ v++Wdl  gkll+++t  h+++v++l+f++  + l+
   Q: 102  FHPFGEFFASGSSDTNMKIWDMRKKRCIH-TYQGHTRRIDVLRFTPDGRWIVSGGADNSVKIWDLTAGKLLHDFTL-HEGPVNCLDFHPHEFLLA 194
           *****************************.*********************************************8.****************** PP
   S: 197  sgsldgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           +gs d+tvk+wdl+t e          r++ +  + v+s+ f ++++ l +g  ++s+++  W
   Q: 195  TGSADKTVKFWDLETFELigssgpenCREYYEPASVVRSMTFNSDGKALFCGL-HESLKVlsW 256
           **************5555555555569999*******************9995.555555445 PP

Organism

Brachypodium distachyon

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MPEEFVAHGS DVNCAKFGRQ TSRVLITGGD DQKINLWAVG KPSAILSLSG LTSPVESVSF 60
DSSEVMIGAG AASGTIKIWD IEEAKVVRTF TGHRSNCVSL DFHPFGEFFA SGSSDTNMKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCAGAGG AGTTTGTCGC TCATGGTTCG GATGTCAATT GTGCCAAGTT TGGGAGGCAG 60
ACATCACGAG TCCTCATTAC TGGTGGGGAC GATCAGAAGA TCAATCTTTG GGCCGTAGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	68.47	0.00e+00	1067.00
IUUC-Atr-002899	Amborella trichopoda	48.10	0.00e+00	694.00
IUUC-Gma-044134	Glycine max	48.89	0.00e+00	673.00
IUUC-Hvu-047781	Hordeum vulgare	77.41	0.00e+00	1234.00
IUUC-Lpe-051597	Leersia perrieri	75.75	0.00e+00	704.00
IUUC-Oba-075845	Oryza barthii	64.90	0.00e+00	1056.00
IUUC-Obr-076798	Oryza brachyantha	65.36	0.00e+00	1104.00
IUUC-Ogu-079022	Oryza glumaepatula	65.82	0.00e+00	1098.00
IUUC-Oin-080135	Oryza indica	66.28	0.00e+00	1101.00
IUUC-Olo-080665	Oryza longistaminata	64.70	0.00e+00	945.00
IUUC-Ome-081884	Oryza meridionalis	66.21	0.00e+00	1099.00
IUUC-Oni-082726	Oryza nivara	59.60	0.00e+00	909.00
IUUC-Opu-083637	Oryza punctata	65.59	0.00e+00	1103.00
IUUC-Oru-085123	Oryza rufipogon	66.17	0.00e+00	1098.00
IUUC-Osa-086267	Oryza sativa	66.17	0.00e+00	1098.00
IUUC-Ppe-101237	Prunus persica	47.54	0.00e+00	704.00
IUUC-Smo-109379	Selaginella moellendorffii	43.25	2.00e-171	595.00
IUUC-Sit-109837	Setaria italica	62.17	0.00e+00	1019.00
IUUC-Tae-123176	Triticum aestivum	75.79	0.00e+00	1186.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence