iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-003090

Ensembl Protein ID

ERN06013

UniProt Accession

W1PDH6; W1PDH6_AMBTC

Genbank Protein ID

ERN06013.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

KI393933

Gene Name

AMTR_s00142p00013680

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00142p00013680	ERN06013	ERN06013

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-34	116.7	184	224
UBD/Beta-Prp	9.30e-68	229.0	13	291

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H  +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HLKGVNCVDYftgGDrPYLITGSDDHTAKVWDYQTKSCVQT 224
           8889****966*9778*******************999986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
           ++++++++v+ +p +++++++ ++g++ +w+++++++ +s++  e +v++ kf+ +++++v g++D++i+v++++t + v ++++h+d++++++++p+  +
   Q: 13   QRSERVKSVDLHPTEPWILASLYSGSVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWIVAGADDMIIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113
           56778999********************************************************************************************* PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvkl 206
           ++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDr +++W+l + +   tl   h + v++++     ++++l++gs+d t k+
   Q: 114  VLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDtNTFASASLDRSIKIWNLGSPDPNFTLDA-HLKGVNCVDyfTGGDRPYLITGSDDHTAKV 213
           *******************9999*********************************************98.*********7445566************** PP
   S: 207  wdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgs 284
           wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +l+ +++v++  +
   Q: 214  WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYLKGSNRVVIGYD 291
           ******************************************************************988888875443 PP

Organism

Amborella trichopoda

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLEIKKK LAQRSERVKS VDLHPTEPWI LASLYSGSVC IWNYQSQTMA KSFEVTELPV 60
RSAKFIARKQ WIVAGADDMI IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT LPYVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTAAGTG CAATCTCATA TCCGATATCA GTTTAACATT TCTCTGTAAG AAAGTTGTTT 60
TCTCTAAGAT GGGACTAGAT CTCGCGCAAA TGCTTCTGAT TTGGCGAAAG GCTTCATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	69.10	0.00e+00	1289.00
IUUC-Aml-002154	Ailuropoda melanoleuca	58.73	0.00e+00	1073.00
IUUC-Apl-003976	Anas platyrhynchos	58.93	0.00e+00	1076.00
IUUC-Aca-004301	Anolis carolinensis	58.84	0.00e+00	1082.00
IUUC-Aly-006508	Arabidopsis lyrata	77.65	0.00e+00	1489.00
IUUC-Ath-007635	Arabidopsis thaliana	76.78	0.00e+00	1477.00
IUUC-Ago-007914	Ashbya gossypii	48.49	0.00e+00	726.00
IUUC-Acl-008237	Aspergillus clavatus	54.59	0.00e+00	886.00
IUUC-Afl-008535	Aspergillus flavus	55.17	0.00e+00	846.00
IUUC-Afu-008845	Aspergillus fumigatus	55.60	0.00e+00	875.00
IUUC-Ani-009135	Aspergillus nidulans	56.00	0.00e+00	872.00
IUUC-Ang-009654	Aspergillus niger	56.82	0.00e+00	815.00
IUUC-Aor-009939	Aspergillus oryzae	55.60	0.00e+00	898.00
IUUC-Ate-010355	Aspergillus terreus	54.33	0.00e+00	863.00
IUUC-Ame-010922	Astyanax mexicanus	53.75	0.00e+00	917.00
IUUC-Bgr-012249	Blumeria graminis	52.29	0.00e+00	872.00
IUUC-Bta-013579	Bos taurus	62.24	0.00e+00	986.00
IUUC-Bci-013866	Botrytis cinerea	55.73	0.00e+00	858.00
IUUC-Bdi-015046	Brachypodium distachyon	78.33	0.00e+00	1460.00
IUUC-Bol-016271	Brassica oleracea	77.08	0.00e+00	1486.00
IUUC-Bra-017758	Brassica rapa	76.48	0.00e+00	1474.00
IUUC-Cel-018387	Caenorhabditis elegans	53.12	0.00e+00	936.00
IUUC-Cja-019145	Callithrix jacchus	58.66	0.00e+00	1076.00
IUUC-Cfa-020564	Canis familiaris	58.78	0.00e+00	1077.00
IUUC-Cpo-022201	Cavia porcellus	58.84	0.00e+00	1079.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	63.98	0.00e+00	1094.00
IUUC-Csa-023383	Chlorocebus sabaeus	65.79	0.00e+00	838.00
IUUC-Cho-024454	Choloepus hoffmanni	59.16	0.00e+00	941.00
IUUC-Cin-025681	Ciona intestinalis	57.70	0.00e+00	961.00
IUUC-Csv-026012	Ciona savignyi	60.29	0.00e+00	938.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	51.60	0.00e+00	772.00
IUUC-Cne-026986	Cryptococcus neoformans	48.34	0.00e+00	842.00
IUUC-Cme-027219	Cyanidioschyzon merolae	47.40	0.00e+00	833.00
IUUC-Dre-027846	Danio rerio	58.78	0.00e+00	1071.00
IUUC-Dor-030462	Dipodomys ordii	59.52	0.00e+00	855.00
IUUC-Dse-031268	Dothistroma septosporum	51.44	0.00e+00	867.00
IUUC-Dme-031791	Drosophila melanogaster	53.63	0.00e+00	946.00
IUUC-Ete-033166	Echinops telfairi	58.57	0.00e+00	702.00
IUUC-Eca-034180	Equus caballus	57.27	0.00e+00	1031.00
IUUC-Eeu-035086	Erinaceus europaeus	46.20	3.00e-114	405.00
IUUC-Fca-036265	Felis catus	58.78	0.00e+00	1077.00
IUUC-Fal-037202	Ficedula albicollis	58.06	0.00e+00	1029.00
IUUC-Fox-037711	Fusarium oxysporum	55.53	0.00e+00	825.00
IUUC-Fso-038268	Fusarium solani	53.85	0.00e+00	830.00
IUUC-Gmo-039046	Gadus morhua	58.28	0.00e+00	1063.00
IUUC-Ggr-039863	Gaeumannomyces graminis	54.67	0.00e+00	840.00
IUUC-Gga-041112	Gallus gallus	59.56	0.00e+00	1085.00
IUUC-Gac-041733	Gasterosteus aculeatus	57.72	0.00e+00	1026.00
IUUC-Gma-042910	Glycine max	81.93	0.00e+00	1540.00
IUUC-Ggo-044984	Gorilla gorilla	58.66	0.00e+00	1075.00
IUUC-Hsa-046698	Homo sapiens	58.66	0.00e+00	1076.00
IUUC-Hvu-047669	Hordeum vulgare	90.11	0.00e+00	688.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	58.84	0.00e+00	1075.00
IUUC-Kpa-049265	Komagataella pastoris	52.27	0.00e+00	835.00
IUUC-Lch-050473	Latimeria chalumnae	59.05	0.00e+00	1078.00
IUUC-Lpe-051579	Leersia perrieri	79.30	0.00e+00	1451.00
IUUC-Loc-052675	Lepisosteus oculatus	59.05	0.00e+00	1075.00
IUUC-Lma-053218	Leptosphaeria maculans	53.89	0.00e+00	856.00
IUUC-Laf-053757	Loxodonta africana	58.71	0.00e+00	1071.00
IUUC-Mcc-054859	Macaca mulatta	58.66	0.00e+00	1075.00
IUUC-Meu-056174	Macropus eugenii	47.36	2.00e-98	352.00
IUUC-Mor-057264	Magnaporthe oryzae	54.46	0.00e+00	848.00
IUUC-Mpo-057538	Magnaporthe poae	54.67	0.00e+00	845.00
IUUC-Mtr-058618	Medicago truncatula	81.20	0.00e+00	1509.00
IUUC-Mla-058937	Melampsora laricipopulina	51.39	0.00e+00	872.00
IUUC-Mga-059875	Meleagris gallopavo	59.31	0.00e+00	1081.00
IUUC-Mvi-060240	Microbotryum violaceum	50.65	0.00e+00	874.00
IUUC-Mmr-061261	Microcebus murinus	58.78	0.00e+00	1077.00
IUUC-Mdo-062076	Monodelphis domestica	59.01	0.00e+00	1082.00
IUUC-Mmu-063324	Mus musculus	58.78	0.00e+00	1078.00
IUUC-Mac-064636	Musa acuminata	81.08	0.00e+00	1513.00
IUUC-Mpu-065961	Mustela putorius furo	58.78	0.00e+00	1076.00
IUUC-Mlu-067059	Myotis lucifugus	58.66	0.00e+00	1045.00
IUUC-Nfi-068277	Neosartorya fischeri	55.70	0.00e+00	866.00
IUUC-Ncr-068659	Neurospora crassa	51.38	0.00e+00	869.00
IUUC-Nle-069034	Nomascus leucogenys	58.66	0.00e+00	1075.00
IUUC-Opr-070334	Ochotona princeps	62.96	0.00e+00	1020.00
IUUC-Ont-071563	Oreochromis niloticus	58.76	0.00e+00	1071.00
IUUC-Oan-073416	Ornithorhynchus anatinus	58.06	0.00e+00	1017.00
IUUC-Ocu-074522	Oryctolagus cuniculus	58.98	0.00e+00	1073.00
IUUC-Oba-075760	Oryza barthii	77.68	0.00e+00	1456.00
IUUC-Obr-076163	Oryza brachyantha	79.78	0.00e+00	1469.00
IUUC-Ogl-077450	Oryza glaberrima	78.54	0.00e+00	1481.00
IUUC-Ogu-078994	Oryza glumaepatula	77.68	0.00e+00	1453.00
IUUC-Oin-079211	Oryza indica	80.09	0.00e+00	1417.00
IUUC-Olo-080731	Oryza longistaminata	76.68	0.00e+00	1430.00
IUUC-Ome-081762	Oryza meridionalis	75.06	0.00e+00	1330.00
IUUC-Oni-082324	Oryza nivara	77.68	0.00e+00	1455.00
IUUC-Opu-083125	Oryza punctata	77.34	0.00e+00	1425.00
IUUC-Oru-084829	Oryza rufipogon	77.68	0.00e+00	1454.00
IUUC-Osa-086026	Oryza sativa	82.28	0.00e+00	1472.00
IUUC-Ola-087245	Oryzias latipes	59.76	0.00e+00	1063.00
IUUC-Olu-087655	Ostreococcus lucimarinus	62.98	0.00e+00	1100.00
IUUC-Oga-088163	Otolemur garnettii	56.73	0.00e+00	1017.00
IUUC-Oar-089842	Ovis aries	58.78	0.00e+00	1078.00
IUUC-Ptr-090501	Pan troglodytes	58.66	0.00e+00	1076.00
IUUC-Pan-092011	Papio anubis	58.66	0.00e+00	1075.00
IUUC-Psi-093308	Pelodiscus sinensis	58.66	0.00e+00	1076.00
IUUC-Pma-094695	Petromyzon marinus	58.48	0.00e+00	950.00
IUUC-Pno-094785	Phaeosphaeria nodorum	60.14	5.00e-105	374.00
IUUC-Ppa-095911	Physcomitrella patens	76.53	0.00e+00	1381.00
IUUC-Pfo-096587	Poecilia formosa	58.50	0.00e+00	1067.00
IUUC-Pab-097926	Pongo abelii	57.85	0.00e+00	1015.00
IUUC-Pop-099634	Populus trichocarpa	82.88	0.00e+00	1497.00
IUUC-Pca-100965	Procavia capensis	57.92	0.00e+00	1044.00
IUUC-Ppe-101470	Prunus persica	80.66	0.00e+00	1540.00
IUUC-Pva-102451	Pteropus vampyrus	58.47	0.00e+00	848.00
IUUC-Pgr-103453	Puccinia graminis	50.54	0.00e+00	868.00
IUUC-Ptt-103868	Puccinia triticina	50.54	0.00e+00	865.00
IUUC-Pte-104274	Pyrenophora teres	56.21	0.00e+00	885.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	55.59	0.00e+00	835.00
IUUC-Rno-105979	Rattus norvegicus	53.98	0.00e+00	830.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.54	0.00e+00	747.00
IUUC-Sha-106905	Sarcophilus harrisii	59.01	0.00e+00	1080.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	47.38	0.00e+00	762.00
IUUC-Spo-108299	Schizosaccharomyces pombe	47.52	0.00e+00	783.00
IUUC-Smo-108828	Selaginella moellendorffii	78.99	0.00e+00	1362.00
IUUC-Sit-110239	Setaria italica	78.27	0.00e+00	1469.00
IUUC-Sly-111775	Solanum lycopersicum	78.25	0.00e+00	1484.00
IUUC-Stu-112906	Solanum tuberosum	77.02	0.00e+00	1345.00
IUUC-Sar-113472	Sorex araneus	57.10	0.00e+00	762.00
IUUC-Sbi-113801	Sorghum bicolor	77.18	0.00e+00	1450.00
IUUC-Sre-115040	Sporisorium reilianum	51.14	0.00e+00	874.00
IUUC-Ssc-115593	Sus scrofa	58.66	0.00e+00	1075.00
IUUC-Tgu-117239	Taeniopygia guttata	59.16	0.00e+00	1080.00
IUUC-Tru-118025	Takifugu rubripes	59.17	0.00e+00	1062.00
IUUC-Tsy-118824	Tarsius syrichta	58.10	0.00e+00	787.00
IUUC-Tni-120142	Tetraodon nigroviridis	59.59	0.00e+00	1059.00
IUUC-Tca-121613	Theobroma cacao	81.65	0.00e+00	1560.00
IUUC-Tre-122072	Trichoderma reesei	51.81	0.00e+00	874.00
IUUC-Tvi-122546	Trichoderma virens	54.67	0.00e+00	859.00
IUUC-Tae-125395	Triticum aestivum	78.21	0.00e+00	1480.00
IUUC-Tur-126283	Triticum urartu	69.72	0.00e+00	1287.00
IUUC-Tme-127041	Tuber melanosporum	54.99	0.00e+00	880.00
IUUC-Tbe-127770	Tupaia belangeri	60.45	0.00e+00	889.00
IUUC-Ttr-129294	Tursiops truncatus	58.66	0.00e+00	1073.00
IUUC-Uma-129351	Ustilago maydis	49.34	0.00e+00	863.00
IUUC-Vda-129716	Verticillium dahliae	55.33	0.00e+00	885.00
IUUC-Vpa-130037	Vicugna pacos	46.72	7.00e-118	417.00
IUUC-Vvi-131689	Vitis vinifera	85.01	0.00e+00	1525.00
IUUC-Xtr-132633	Xenopus tropicalis	58.61	0.00e+00	1075.00
IUUC-Xma-133347	Xiphophorus maculatus	58.73	0.00e+00	1069.00
IUUC-Yli-134455	Yarrowia lipolytica	52.12	0.00e+00	806.00
IUUC-Zma-135867	Zea mays	78.13	0.00e+00	1489.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence