iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091148

Ensembl Protein ID

ENSPTRP00000006511.3

UniProt Accession

H2Q3X3; H2Q3X3_PANTR

Genbank Protein ID

JAA01282.1; JAA18104.1; JAA32593.1; JAA40018.1

Protein Name

Nuclear RNA export factor 1

Genbank Nucleotide ID

AACZ03082345; GABF01004041; GABD01000507; GABE01004721

Gene Name

NXF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000003791.3	ENSPTRT00000007059.3	ENSPTRP00000006511.3

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBA	24.74	7.00e-10	60.50	IUUC-Sce-106429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MADEGKSYSE HDDERVNFPQ RKKKGRGPFR WKYGEGNRRS GRGGSGIRSS RLEEDDGDVA 60
MSDAQDGPRV RYNPYTTRPN RRGDTWHDRD RIHVTVRRDR APPERGGAGT SQDGTSKNWF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGCGCGCGA CGTGCTTTGC TGTATAAATG CGGTGGCGCC CGGCGTAGGG ACACTTCGGT 60
CCTGAGCGCT TGGGAGTTAG GTTGTTTGCC GGCGTAGCGG CCAGCGCCTG AGCCCGCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR032675--L_dom-like
IPR001611--Leu-rich_rpt
IPR002075--NTF2
IPR032710--NTF2-like_dom
IPR018222--Nuclear_transport_factor_2_euk
IPR012677--Nucleotide-bd_a/b_plait
IPR030217--NXF_fam
IPR000504--RRM_dom
IPR005637--TAP_C_dom
IPR015245--Tap_RNA-bd
IPR009060--UBA-like

PROSITE

PS51450--LRR
PS50177--NTF2_DOMAIN
PS51281--TAP_C

Pfam

PF02136--NTF2
PF09162--Tap-RNA_bind
PF03943--TAP_C

SMART

SM00804--TAP_C

Gene Ontology

GO:0005737--C:cytoplasm
GO:0042405--C:nuclear inclusion body
GO:0005643--C:nuclear pore
GO:0016607--C:nuclear speck
GO:0005634--C:nucleus
GO:0000346--C:transcription export complex
GO:0003729--F:mRNA binding
GO:0005487--F:nucleocytoplasmic transporter activity
GO:0000166--F:nucleotide binding
GO:0003727--F:single-stranded RNA binding
GO:0016973--P:poly(A)+ mRNA export from nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001516	Ailuropoda melanoleuca	92.69	0.00e+00	1082.00
IUUC-Apl-003526	Anas platyrhynchos	35.35	4.00e-03	35.00
IUUC-Aca-005187	Anolis carolinensis	64.59	0.00e+00	756.00
IUUC-Ath-006825	Arabidopsis thaliana	31.25	2.50e+00	26.60
IUUC-Ago-007780	Ashbya gossypii	23.06	3.00e-18	86.70
IUUC-Acl-008191	Aspergillus clavatus	24.59	9.00e-23	101.00
IUUC-Afl-008512	Aspergillus flavus	26.12	2.00e-26	114.00
IUUC-Afu-009048	Aspergillus fumigatus	25.81	1.00e-25	111.00
IUUC-Ani-009320	Aspergillus nidulans	22.00	8.00e-18	85.50
IUUC-Ang-009834	Aspergillus niger	24.54	2.00e-21	97.10
IUUC-Aor-010039	Aspergillus oryzae	25.66	8.00e-23	102.00
IUUC-Ate-010321	Aspergillus terreus	25.00	2.00e-20	94.40
IUUC-Ame-011034	Astyanax mexicanus	58.68	0.00e+00	650.00
IUUC-Bgr-012142	Blumeria graminis	25.49	1.00e-17	84.70
IUUC-Bta-013268	Bos taurus	92.75	0.00e+00	1063.00
IUUC-Bci-013951	Botrytis cinerea	27.17	1.00e-21	97.80
IUUC-Cel-018213	Caenorhabditis elegans	33.33	2.40e-01	28.90
IUUC-Cja-019064	Callithrix jacchus	98.38	0.00e+00	1134.00
IUUC-Cfa-020712	Canis familiaris	93.11	0.00e+00	1044.00
IUUC-Cpo-021814	Cavia porcellus	95.48	0.00e+00	1105.00
IUUC-Csa-023652	Chlorocebus sabaeus	99.84	0.00e+00	1155.00
IUUC-Cho-024546	Choloepus hoffmanni	54.55	2.30e-02	32.30
IUUC-Cin-025669	Ciona intestinalis	34.59	1.00e-93	337.00
IUUC-Csv-025957	Ciona savignyi	35.19	1.00e-85	310.00
IUUC-Cgl-026395	Colletotrichum gloeosporioides	26.78	4.00e-27	116.00
IUUC-Cne-026967	Cryptococcus neoformans	23.14	1.00e-04	41.60
IUUC-Dre-028476	Danio rerio	54.45	8.00e-153	533.00
IUUC-Dno-029301	Dasypus novemcinctus	92.57	0.00e+00	1053.00
IUUC-Dor-030764	Dipodomys ordii	94.68	0.00e+00	1101.00
IUUC-Dse-031489	Dothistroma septosporum	24.77	2.00e-17	84.00
IUUC-Dme-031623	Drosophila melanogaster	32.32	9.00e-78	284.00
IUUC-Ete-032992	Echinops telfairi	79.73	0.00e+00	825.00
IUUC-Eca-033208	Equus caballus	94.81	0.00e+00	1035.00
IUUC-Eeu-034759	Erinaceus europaeus	92.41	0.00e+00	1076.00
IUUC-Fca-035671	Felis catus	94.99	0.00e+00	1096.00
IUUC-Fal-036625	Ficedula albicollis	35.35	5.00e-03	34.70
IUUC-Fox-037892	Fusarium oxysporum	28.50	2.00e-21	97.80
IUUC-Fso-038402	Fusarium solani	26.91	6.00e-21	95.90
IUUC-Gmo-039325	Gadus morhua	54.96	4.00e-150	525.00
IUUC-Ggr-039736	Gaeumannomyces graminis	24.07	1.00e-12	68.20
IUUC-Gga-040508	Gallus gallus	72.81	0.00e+00	802.00
IUUC-Gac-041798	Gasterosteus aculeatus	58.04	0.00e+00	699.00
IUUC-Ggo-044655	Gorilla gorilla	99.34	0.00e+00	1118.00
IUUC-Hsa-047028	Homo sapiens	100.00	0.00e+00	1155.00
IUUC-Itr-048415	Ictidomys tridecemlineatus	91.61	0.00e+00	1074.00
IUUC-Kpa-049280	Komagataella pastoris	23.30	4.00e-21	96.30
IUUC-Lch-049501	Latimeria chalumnae	70.70	0.00e+00	848.00
IUUC-Loc-052299	Lepisosteus oculatus	64.34	2.00e-173	602.00
IUUC-Laf-053523	Loxodonta africana	93.05	0.00e+00	1080.00
IUUC-Mcc-055389	Macaca mulatta	100.00	0.00e+00	1066.00
IUUC-Meu-056620	Macropus eugenii	58.35	5.00e-143	500.00
IUUC-Mor-057232	Magnaporthe oryzae	27.33	8.00e-28	118.00
IUUC-Mpo-057539	Magnaporthe poae	24.23	2.00e-10	60.80
IUUC-Mla-059053	Melampsora laricipopulina	26.48	5.00e-27	115.00
IUUC-Mga-059220	Meleagris gallopavo	35.35	5.00e-03	34.70
IUUC-Mvi-060283	Microbotryum violaceum	25.86	1.00e-21	97.80
IUUC-Mmr-061583	Microcebus murinus	97.42	0.00e+00	1124.00
IUUC-Mdo-062158	Monodelphis domestica	82.47	0.00e+00	971.00
IUUC-Mmu-064202	Mus musculus	91.11	0.00e+00	1027.00
IUUC-Mpu-065730	Mustela putorius furo	93.86	0.00e+00	1080.00
IUUC-Mlu-066975	Myotis lucifugus	91.13	0.00e+00	1013.00
IUUC-Nfi-068368	Neosartorya fischeri	26.02	4.00e-25	109.00
IUUC-Ncr-068724	Neurospora crassa	25.16	8.00e-16	78.60
IUUC-Nle-069816	Nomascus leucogenys	99.68	0.00e+00	1147.00
IUUC-Opr-070244	Ochotona princeps	43.74	1.00e-128	453.00
IUUC-Ont-072608	Oreochromis niloticus	58.86	0.00e+00	721.00
IUUC-Oan-073580	Ornithorhynchus anatinus	33.33	2.00e-03	36.20
IUUC-Ocu-074226	Oryctolagus cuniculus	94.02	0.00e+00	1139.00
IUUC-Ola-087008	Oryzias latipes	64.81	0.00e+00	684.00
IUUC-Oga-088317	Otolemur garnettii	93.25	0.00e+00	1029.00
IUUC-Oar-089720	Ovis aries	92.43	0.00e+00	1034.00
IUUC-Pan-091764	Papio anubis	99.84	0.00e+00	1153.00
IUUC-Psi-094071	Pelodiscus sinensis	66.03	0.00e+00	803.00
IUUC-Pno-095045	Phaeosphaeria nodorum	28.57	1.00e-03	37.70
IUUC-Pfo-096500	Poecilia formosa	60.10	0.00e+00	731.00
IUUC-Pab-098014	Pongo abelii	98.06	0.00e+00	1145.00
IUUC-Pca-100121	Procavia capensis	91.11	0.00e+00	1021.00
IUUC-Pva-102865	Pteropus vampyrus	93.86	0.00e+00	1032.00
IUUC-Pgr-103333	Puccinia graminis	25.14	1.00e-17	84.70
IUUC-Ptt-103702	Puccinia triticina	25.16	2.00e-20	94.40
IUUC-Pte-104388	Pyrenophora teres	22.50	4.50e-02	32.00
IUUC-Rno-106100	Rattus norvegicus	92.57	0.00e+00	1052.00
IUUC-Sce-106429	Saccharomyces cerevisiae	22.22	5.00e-15	75.90
IUUC-Sha-106834	Sarcophilus harrisii	81.76	0.00e+00	979.00
IUUC-Sja-107818	Schizosaccharomyces japonicus	26.24	9.00e-20	91.70
IUUC-Spo-108301	Schizosaccharomyces pombe	27.19	1.00e-33	137.00
IUUC-Ssl-108512	Sclerotinia sclerotiorum	25.88	3.00e-21	97.10
IUUC-Sar-112963	Sorex araneus	46.04	1.00e-127	449.00
IUUC-Sre-114950	Sporisorium reilianum	23.58	3.00e-21	97.10
IUUC-Ssc-116010	Sus scrofa	93.08	0.00e+00	1024.00
IUUC-Tgu-116603	Taeniopygia guttata	36.36	5.00e-03	35.00
IUUC-Tru-118148	Takifugu rubripes	59.00	0.00e+00	699.00
IUUC-Tsy-119506	Tarsius syrichta	40.62	9.00e-06	43.50
IUUC-Tre-121894	Trichoderma reesei	26.43	6.00e-27	115.00
IUUC-Tvi-122501	Trichoderma virens	27.91	3.00e-31	129.00
IUUC-Tme-127084	Tuber melanosporum	25.74	2.00e-27	117.00
IUUC-Tbe-127980	Tupaia belangeri	64.20	2.00e-90	325.00
IUUC-Ttr-128656	Tursiops truncatus	56.96	0.00e+00	676.00
IUUC-Uma-129530	Ustilago maydis	24.33	7.00e-27	115.00
IUUC-Vda-129709	Verticillium dahliae	26.39	1.00e-21	97.80
IUUC-Vpa-130739	Vicugna pacos	46.36	8.00e-105	373.00
IUUC-Xtr-132404	Xenopus tropicalis	61.06	0.00e+00	747.00
IUUC-Xma-133051	Xiphophorus maculatus	58.90	0.00e+00	705.00
IUUC-Yli-134681	Yarrowia lipolytica	24.88	3.00e-30	126.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence