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Tag Content
iUUCD ID IUUC-Aly-005913
Ensembl Protein ID fgenesh2_kg.6__3261__AT4G04940.1
UniProt Accession D7M1V5; D7M1V5_ARALL
Genbank Protein ID EFH51079.1
Protein Name Transducin family protein
Genbank Nucleotide ID GL348718
Gene Name ARALYDRAFT_490127
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.6__3261__AT4G04940.1 fgenesh2_kg.6__3261__AT4G04940.1 fgenesh2_kg.6__3261__AT4G04940.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.40e-27 93.0 555 586
UBD/Beta-Prp 8.30e-56 190.0 153 374
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHtd+vt+l+f  d + l+s+s Dg++++WD+
   Q: 555  GHTDRVTDLCFsEDgKWLLSSSMDGSLRIWDV 586
           8**********955699**************6 PP
   

   UBD/Beta-Prp
   S: 66   ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvnc 142
             + gs+ + +++w+++t k+++ +kg  +sv s+ +sp  d++++G +d  i+v +++ ++++ +++   +g+v+ 
   Q: 153  KVLVGSQEGPLQLWNINTKKMIYEFKGWGSSVSSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTA 229
           56889************************************************************999********* PP
   S: 143  vvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq....tgec 214
           ++++ dg  ll+sG+  +++ +W+l+ ++l    + +h++s+ sl+f  n + l+s+s d+++k+w +       + 
   Q: 230  LSFSTDGrPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDtndgDPRL 306
           ******************************************************************99966555566 PP
   S: 215  vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn.................s 265
           +r   gh+++++++rf +n+ +++s+++D+  r++ + + +  + l++++                 +
   Q: 307  LRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHisrrakklrlkdeelklK 374
           99999******************************999888888888888555555555555554444 PP
   
Organism Arabidopsis lyrata
Protein Sequence
(Fasta)
MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR 60
ALASYRDYTF AAFGNEIAVF KRAHQVATWS KHVAKVDLLL LFGEHVLSLD VEGNMFIWAF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-005913|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATCTCCTCCA TCGCTCCTGC GCCGCGTTTT CTCTCTCAAG CTCTTAAAAC AATTCTTTGC 60
TTGATAAAAA TCCTAAATTG TTTCCCCGAG AAACCCTAAT TTCTTGTTCG AAGATGGGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-005913|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing
KEGG aly:ARALYDRAFT_490127
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001096 Aegilops tauschii 67.89 0.00e+00 1203.00
IUUC-Aml-002289 Ailuropoda melanoleuca 37.43 3.00e-154 538.00
IUUC-Atr-002859 Amborella trichopoda 67.67 0.00e+00 1133.00
IUUC-Apl-003505 Anas platyrhynchos 38.10 2.00e-143 502.00
IUUC-Aca-004339 Anolis carolinensis 36.09 6.00e-150 524.00
IUUC-Ath-006767 Arabidopsis thaliana 97.04 0.00e+00 1728.00
IUUC-Ago-007763 Ashbya gossypii 30.43 3.00e-115 409.00
IUUC-Acl-008275 Aspergillus clavatus 30.59 8.00e-81 294.00
IUUC-Afl-008457 Aspergillus flavus 31.39 1.00e-78 287.00
IUUC-Afu-008914 Aspergillus fumigatus 29.61 8.00e-87 314.00
IUUC-Ani-009225 Aspergillus nidulans 31.73 1.00e-94 340.00
IUUC-Aor-010046 Aspergillus oryzae 31.48 8.00e-109 387.00
IUUC-Ate-010337 Aspergillus terreus 30.62 6.00e-102 365.00
IUUC-Ame-010963 Astyanax mexicanus 36.76 1.00e-149 523.00
IUUC-Bgr-011973 Blumeria graminis 29.84 1.00e-108 387.00
IUUC-Bta-012462 Bos taurus 37.50 1.00e-156 546.00
IUUC-Bci-013940 Botrytis cinerea 30.35 6.00e-119 421.00
IUUC-Bdi-014725 Brachypodium distachyon 69.19 0.00e+00 1238.00
IUUC-Bol-016534 Brassica oleracea 91.33 0.00e+00 1598.00
IUUC-Bra-016781 Brassica rapa 88.69 0.00e+00 1578.00
IUUC-Cel-018581 Caenorhabditis elegans 27.69 7.00e-83 301.00
IUUC-Cja-019675 Callithrix jacchus 36.84 1.00e-161 563.00
IUUC-Cfa-020118 Canis familiaris 37.42 1.00e-153 536.00
IUUC-Cpo-021798 Cavia porcellus 36.43 6.00e-151 527.00
IUUC-Cre-022566 Chlamydomonas reinhardtii 31.37 4.00e-43 168.00
IUUC-Csa-023547 Chlorocebus sabaeus 37.25 9.00e-152 530.00
IUUC-Cho-024518 Choloepus hoffmanni 31.85 3.00e-101 362.00
IUUC-Cin-025339 Ciona intestinalis 33.09 1.00e-143 503.00
IUUC-Cgl-026476 Colletotrichum gloeosporioides 29.43 2.00e-104 373.00
IUUC-Cne-026859 Cryptococcus neoformans 33.84 2.00e-134 472.00
IUUC-Cme-027173 Cyanidioschyzon merolae 27.48 3.00e-82 299.00
IUUC-Dre-027733 Danio rerio 35.60 4.00e-147 514.00
IUUC-Dno-029439 Dasypus novemcinctus 36.88 4.00e-149 521.00
IUUC-Dor-030329 Dipodomys ordii 34.16 3.00e-63 236.00
IUUC-Dse-031511 Dothistroma septosporum 29.44 1.00e-94 340.00
IUUC-Dme-031694 Drosophila melanogaster 32.01 2.00e-127 449.00
IUUC-Ete-032930 Echinops telfairi 36.63 2.00e-128 452.00
IUUC-Eca-033302 Equus caballus 37.27 9.00e-152 530.00
IUUC-Eeu-034516 Erinaceus europaeus 37.31 4.00e-161 561.00
IUUC-Fca-036064 Felis catus 36.68 5.00e-151 527.00
IUUC-Fal-037024 Ficedula albicollis 36.88 1.00e-158 553.00
IUUC-Fox-037787 Fusarium oxysporum 29.76 8.00e-92 331.00
IUUC-Fso-038378 Fusarium solani 29.52 1.00e-95 344.00
IUUC-Gmo-039637 Gadus morhua 35.40 1.00e-78 286.00
IUUC-Ggr-040108 Gaeumannomyces graminis 29.37 2.00e-98 353.00
IUUC-Gga-040982 Gallus gallus 36.20 3.00e-165 575.00
IUUC-Gac-041565 Gasterosteus aculeatus 35.69 2.00e-136 479.00
IUUC-Gma-043185 Glycine max 74.40 0.00e+00 1360.00
IUUC-Ggo-045463 Gorilla gorilla 36.65 3.00e-152 531.00
IUUC-Hsa-045675 Homo sapiens 36.94 1.00e-154 539.00
IUUC-Hvu-047352 Hordeum vulgare 68.01 0.00e+00 1116.00
IUUC-Itr-048088 Ictidomys tridecemlineatus 35.78 1.00e-160 560.00
IUUC-Kpa-049164 Komagataella pastoris 31.71 1.00e-111 397.00
IUUC-Lch-050476 Latimeria chalumnae 35.84 2.00e-158 552.00
IUUC-Lpe-051556 Leersia perrieri 55.79 0.00e+00 922.00
IUUC-Loc-052820 Lepisosteus oculatus 35.93 2.00e-152 532.00
IUUC-Lma-052961 Leptosphaeria maculans 29.34 2.00e-93 336.00
IUUC-Laf-054006 Loxodonta africana 35.75 2.00e-143 502.00
IUUC-Mcc-055037 Macaca mulatta 36.84 1.00e-153 536.00
IUUC-Mor-057280 Magnaporthe oryzae 28.94 4.00e-97 348.00
IUUC-Mpo-057408 Magnaporthe poae 29.01 6.00e-94 338.00
IUUC-Mtr-058473 Medicago truncatula 73.20 0.00e+00 1337.00
IUUC-Mla-058892 Melampsora laricipopulina 33.21 2.00e-112 399.00
IUUC-Mga-059598 Meleagris gallopavo 32.09 2.00e-114 406.00
IUUC-Mvi-060334 Microbotryum violaceum 31.60 6.00e-108 384.00
IUUC-Mmr-061239 Microcebus murinus 36.77 4.00e-151 528.00
IUUC-Mdo-062471 Monodelphis domestica 36.57 8.00e-149 520.00
IUUC-Mmu-063872 Mus musculus 36.65 2.00e-157 549.00
IUUC-Mac-064631 Musa acuminata 70.91 0.00e+00 1165.00
IUUC-Mpu-066039 Mustela putorius furo 37.49 2.00e-165 575.00
IUUC-Mlu-067485 Myotis lucifugus 36.81 1.00e-151 530.00
IUUC-Nfi-068319 Neosartorya fischeri 28.07 1.00e-94 340.00
IUUC-Ncr-068725 Neurospora crassa 30.30 9.00e-101 361.00
IUUC-Nle-069050 Nomascus leucogenys 36.73 1.00e-153 536.00
IUUC-Opr-070437 Ochotona princeps 41.23 3.00e-44 172.00
IUUC-Ont-071574 Oreochromis niloticus 35.06 1.00e-142 499.00
IUUC-Oan-072826 Ornithorhynchus anatinus 37.74 5.00e-162 564.00
IUUC-Ocu-073995 Oryctolagus cuniculus 37.70 1.00e-146 513.00
IUUC-Oba-075407 Oryza barthii 62.50 0.00e+00 1072.00
IUUC-Obr-076451 Oryza brachyantha 70.61 0.00e+00 1300.00
IUUC-Ogl-077535 Oryza glaberrima 69.03 0.00e+00 1241.00
IUUC-Ogu-077995 Oryza glumaepatula 62.11 0.00e+00 1092.00
IUUC-Oin-079431 Oryza indica 69.41 0.00e+00 1250.00
IUUC-Olo-080495 Oryza longistaminata 61.50 0.00e+00 1063.00
IUUC-Oni-082336 Oryza nivara 66.78 0.00e+00 1171.00
IUUC-Opu-084028 Oryza punctata 63.94 0.00e+00 1057.00
IUUC-Oru-084500 Oryza rufipogon 61.66 0.00e+00 1063.00
IUUC-Osa-086242 Oryza sativa 69.52 0.00e+00 1249.00
IUUC-Ola-086612 Oryzias latipes 35.45 7.00e-110 390.00
IUUC-Olu-087703 Ostreococcus lucimarinus 35.17 5.00e-151 528.00
IUUC-Oga-088572 Otolemur garnettii 36.48 3.00e-153 535.00
IUUC-Oar-090363 Ovis aries 37.27 4.00e-157 548.00
IUUC-Ptr-090477 Pan troglodytes 36.73 1.00e-152 533.00
IUUC-Pan-092914 Papio anubis 36.84 2.00e-154 539.00
IUUC-Psi-093019 Pelodiscus sinensis 35.71 1.00e-147 516.00
IUUC-Pma-094303 Petromyzon marinus 34.97 5.00e-123 434.00
IUUC-Pno-094938 Phaeosphaeria nodorum 28.79 1.00e-86 314.00
IUUC-Ppa-095720 Physcomitrella patens 53.48 0.00e+00 961.00
IUUC-Pfo-097034 Poecilia formosa 34.71 2.00e-132 466.00
IUUC-Pab-097669 Pongo abelii 36.94 6.00e-154 537.00
IUUC-Pop-098835 Populus trichocarpa 75.88 0.00e+00 1384.00
IUUC-Pca-101097 Procavia capensis 38.83 9.00e-62 231.00
IUUC-Ppe-101430 Prunus persica 75.74 0.00e+00 1412.00
IUUC-Pva-103152 Pteropus vampyrus 36.89 3.00e-157 548.00
IUUC-Pgr-103517 Puccinia graminis 31.09 6.00e-129 454.00
IUUC-Ptt-103697 Puccinia triticina 31.15 3.00e-97 348.00
IUUC-Pte-104121 Pyrenophora teres 28.70 9.00e-92 331.00
IUUC-Pyt-104672 Pyrenophora triticirepentis 28.70 3.00e-92 332.00
IUUC-Rno-105435 Rattus norvegicus 36.77 1.00e-153 536.00
IUUC-Sce-106202 Saccharomyces cerevisiae 30.13 3.00e-101 362.00
IUUC-Sha-107272 Sarcophilus harrisii 37.95 1.00e-144 506.00
IUUC-Sja-107744 Schizosaccharomyces japonicus 36.43 8.00e-152 530.00
IUUC-Spo-108256 Schizosaccharomyces pombe 35.81 7.00e-152 530.00
IUUC-Ssl-108618 Sclerotinia sclerotiorum 30.03 4.00e-115 408.00
IUUC-Smo-108762 Selaginella moellendorffii 56.44 0.00e+00 996.00
IUUC-Sit-110051 Setaria italica 69.62 0.00e+00 1261.00
IUUC-Sly-111181 Solanum lycopersicum 73.55 0.00e+00 1323.00
IUUC-Stu-112018 Solanum tuberosum 73.88 0.00e+00 1326.00
IUUC-Sar-113348 Sorex araneus 35.34 1.00e-102 367.00
IUUC-Sbi-114282 Sorghum bicolor 69.26 0.00e+00 1277.00
IUUC-Sre-114946 Sporisorium reilianum 30.17 3.00e-79 289.00
IUUC-Ssc-115287 Sus scrofa 36.96 3.00e-155 541.00
IUUC-Tgu-117138 Taeniopygia guttata 34.95 1.00e-126 446.00
IUUC-Tru-118232 Takifugu rubripes 35.60 2.00e-138 486.00
IUUC-Tsy-119502 Tarsius syrichta 30.28 3.00e-104 372.00
IUUC-Tni-120378 Tetraodon nigroviridis 38.11 3.00e-139 488.00
IUUC-Tca-121506 Theobroma cacao 76.84 0.00e+00 1370.00
IUUC-Tre-122166 Trichoderma reesei 29.15 3.00e-108 385.00
IUUC-Tvi-122385 Trichoderma virens 29.93 2.00e-108 386.00
IUUC-Tae-122836 Triticum aestivum 68.38 0.00e+00 1280.00
IUUC-Tur-126490 Triticum urartu 59.42 0.00e+00 993.00
IUUC-Tme-127157 Tuber melanosporum 31.21 2.00e-114 406.00
IUUC-Tbe-127981 Tupaia belangeri 38.99 3.00e-130 458.00
IUUC-Ttr-128886 Tursiops truncatus 36.03 2.00e-149 522.00
IUUC-Uma-129439 Ustilago maydis 29.06 2.00e-86 313.00
IUUC-Vda-129760 Verticillium dahliae 29.92 2.00e-105 377.00
IUUC-Vpa-130456 Vicugna pacos 37.00 3.00e-154 538.00
IUUC-Vvi-131086 Vitis vinifera 75.44 0.00e+00 1400.00
IUUC-Xtr-131829 Xenopus tropicalis 37.14 2.00e-166 578.00
IUUC-Xma-133588 Xiphophorus maculatus 34.89 5.00e-132 464.00
IUUC-Yli-134328 Yarrowia lipolytica 31.78 6.00e-106 378.00
IUUC-Zma-135808 Zea mays 68.43 0.00e+00 1259.00
Created Date 25-Jun-2017

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