iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007140

Ensembl Protein ID

AT1G27470.1

UniProt Accession

Q8VYS4; Q8VYS4_ARATH

Genbank Protein ID

AAL49816.1; AAN12900.1; AEE30836.1

Protein Name

Putative uncharacterized protein At1g27470; Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

AY070059; AY150459; CP002684

Gene Name

At1g27470; F17L21.26; F17L21_26

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G27470	AT1G27470.1	AT1G27470.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-11	44.8	201	226

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWD 29
             ++ +  d  ++ sGs Dg i++WD
   Q: 201  ALSVTWsADaQRIFSGSSDGLIRCWD 226
           56899997889*************** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MFEYRCSSID WKPSPVVALA TSADGSQVAA AREDGSLELW LVSPGASSWH CQLIIHGDPK 60
SRISHLAWFG TGSKGSSSAR LFSSSIDGSI SEWDLFDLKQ KVVLDSIGFS IWQIALAPIS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAAAGT CAAAACCCTT TGAAAAACCT AAAAACGCAA TTTGCTTCGT CGTCTCTCAT 60
CTCTTTCTCT TTCTCCGTCG CCACCATGTT TGAGTACCGG TGCAGCTCCA TCGATTGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT1G27470

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ang-009592	Aspergillus niger	26.58	5.00e-22	99.40
IUUC-Bol-016177	Brassica oleracea	81.58	0.00e+00	1235.00
IUUC-Bra-017750	Brassica rapa	82.29	0.00e+00	1282.00
IUUC-Pma-094201	Petromyzon marinus	24.78	3.00e-35	142.00
IUUC-Pno-094924	Phaeosphaeria nodorum	25.63	2.00e-11	63.90
IUUC-Ssl-108650	Sclerotinia sclerotiorum	25.96	2.00e-25	110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence