iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006743

UUCD1 version

UUC-ArT-00133

Ensembl Protein ID

AT1G22670.1

UniProt Accession

F4I2Y3; O80554; RMR3_ARATH

Genbank Protein ID

AAC25519.1; AEE30268.1

Protein Name

Receptor homology region, transmembrane domain- and RING domain-containing protein 3

Genbank Nucleotide ID

AC003979; CP002684

Gene Name

RMR3; At1g22670; T22J18.16

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G22670	AT1G22670.1	AT1G22670.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.40e-07	32.0	232	274

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCled+   ++ ++vlpC H fh  C+  w     + s +  CP+C+
   Q: 232  CAICLEDYivgDK-LRVLPCSHKFHVACVDSW-----LISWRTFCPVCK 274
           ********99555.******************.....5666666****6 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity).

Protein Sequence
(Fasta)

MNLVVLLILT LLLFIVSYVV DAGQVILVDS NITRSFVDME ADFSPSVTTV ETGVVYVAEP 60
LNACRNLRNK PEQSPYGTSP LVLIIRGGCS FEYKVRNAQR SGFKAAIVYD NVDRNFLSAM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATCTTG TTGTTCTGCT AATCCTAACA TTACTCCTTT TCATTGTTTC TTATGTAGTA 60
GACGCAGGCC AAGTCATTTT GGTTGATTCC AACATAACTC GCTCTTTTGT CGACATGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1015--Disulfide bond
KW-0325--Glycoprotein
KW-0472--Membrane
KW-0479--Metal-binding
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0732--Signal
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0926--Vacuole
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003137--PA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF02225--PA
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0031902--C:late endosome membrane
GO:0032586--C:protein storage vacuole membrane
GO:0008270--F:zinc ion binding
GO:0015031--P:protein transport

KEGG

ath:AT1G22670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005412	Arabidopsis lyrata	86.44	0.00e+00	686.00
IUUC-Acl-008363	Aspergillus clavatus	53.19	5.00e-14	71.60
IUUC-Afl-008601	Aspergillus flavus	51.06	2.00e-13	70.10
IUUC-Afu-009008	Aspergillus fumigatus	53.19	8.00e-14	71.20
IUUC-Ani-009169	Aspergillus nidulans	53.19	5.00e-14	72.00
IUUC-Ang-009613	Aspergillus niger	51.06	2.00e-13	70.50
IUUC-Aor-010062	Aspergillus oryzae	51.06	1.00e-13	69.70
IUUC-Ate-010341	Aspergillus terreus	53.19	5.00e-14	71.60
IUUC-Bgr-012120	Blumeria graminis	48.84	5.00e-12	65.10
IUUC-Bci-013936	Botrytis cinerea	50.00	4.00e-15	75.50
IUUC-Bol-016608	Brassica oleracea	57.71	6.00e-114	403.00
IUUC-Bra-016728	Brassica rapa	60.00	1.00e-120	425.00
IUUC-Dse-031214	Dothistroma septosporum	29.17	2.00e-13	70.10
IUUC-Mor-056917	Magnaporthe oryzae	37.78	1.00e-14	73.90
IUUC-Nfi-068450	Neosartorya fischeri	53.19	7.00e-14	71.60
IUUC-Ncr-068696	Neurospora crassa	44.29	1.00e-15	77.00
IUUC-Pno-094874	Phaeosphaeria nodorum	44.93	9.00e-14	70.90
IUUC-Pyt-104819	Pyrenophora triticirepentis	53.06	3.00e-13	69.30
IUUC-Spo-108083	Schizosaccharomyces pombe	25.11	3.00e-16	78.60
IUUC-Ssl-108601	Sclerotinia sclerotiorum	49.02	1.00e-14	73.60
IUUC-Sre-115097	Sporisorium reilianum	56.52	2.00e-13	70.10
IUUC-Ttr-128409	Tursiops truncatus	34.78	5.00e-28	117.00
IUUC-Uma-129559	Ustilago maydis	44.93	3.00e-13	69.70

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence