iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pno-094929

Ensembl Protein ID

SNOT_03471

UniProt Accession

Q0UXP3; YTM1_PHANO

Genbank Protein ID

EAT88676.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

CH445329

Gene Name

YTM1; SNOG_03471

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SNOG_03471	SNOT_03471	SNOT_03471

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.80e-27	92.3	285	324

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+++ f  +d t   s+s+D+t+k WDl t  ++ 
   Q: 285  GHSSPVSSVIFkpDDaTVAYSASHDHTLKTWDLPTAQCVD 324
           8***********6669******************999975 PP

Organism

Phaeosphaeria nodorum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MEPEISDTKV TARFTTRDEN LHLPDQDRTL LISTNLKRVN LSKILNELLG REDDRIPFDI 60
LINGQFLRTT VDEYLTKNGI NAETRLEVEY TRALVPPLNV TSFEHDDWVS AVDVLSQTSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCCTG AAATCTCAGA CACGAAGGTG ACGGCGCGCT TTACGACCAG AGACGAGAAC 60
CTTCACCTTC CTGACCAAGA CCGAACACTC TTAATTTCGA CCAGTAAGCC TAGCAGTATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

pno:SNOG_03471

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	29.23	4.00e-41	160.00
IUUC-Aml-001997	Ailuropoda melanoleuca	28.30	6.00e-33	133.00
IUUC-Atr-002544	Amborella trichopoda	28.71	5.00e-34	136.00
IUUC-Apl-003981	Anas platyrhynchos	26.68	2.00e-34	137.00
IUUC-Aca-004370	Anolis carolinensis	27.59	7.00e-40	156.00
IUUC-Aly-006455	Arabidopsis lyrata	27.12	3.00e-40	157.00
IUUC-Ath-006669	Arabidopsis thaliana	28.33	4.00e-38	150.00
IUUC-Ago-007864	Ashbya gossypii	42.19	9.00e-92	328.00
IUUC-Acl-008177	Aspergillus clavatus	53.72	6.00e-128	449.00
IUUC-Afl-008617	Aspergillus flavus	54.06	2.00e-130	457.00
IUUC-Afu-008752	Aspergillus fumigatus	52.56	4.00e-122	429.00
IUUC-Ani-009136	Aspergillus nidulans	53.78	3.00e-125	440.00
IUUC-Ang-009701	Aspergillus niger	53.56	3.00e-123	433.00
IUUC-Aor-009884	Aspergillus oryzae	53.85	6.00e-130	455.00
IUUC-Ate-010472	Aspergillus terreus	52.15	2.00e-76	277.00
IUUC-Ame-011432	Astyanax mexicanus	26.04	4.00e-37	147.00
IUUC-Bgr-012218	Blumeria graminis	50.33	1.00e-118	417.00
IUUC-Bta-012829	Bos taurus	26.12	3.00e-32	130.00
IUUC-Bci-013953	Botrytis cinerea	48.11	4.00e-121	426.00
IUUC-Bdi-014351	Brachypodium distachyon	29.25	2.00e-37	148.00
IUUC-Bol-016514	Brassica oleracea	27.96	3.00e-40	157.00
IUUC-Bra-017876	Brassica rapa	29.55	2.00e-43	168.00
IUUC-Cel-018569	Caenorhabditis elegans	24.15	1.00e-16	79.00
IUUC-Cja-019468	Callithrix jacchus	26.87	2.00e-33	134.00
IUUC-Cfa-020471	Canis familiaris	26.68	5.00e-31	126.00
IUUC-Cpo-022260	Cavia porcellus	26.87	5.00e-32	130.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	29.98	1.00e-36	145.00
IUUC-Csa-023989	Chlorocebus sabaeus	26.62	3.00e-32	130.00
IUUC-Cho-024426	Choloepus hoffmanni	26.07	4.00e-25	107.00
IUUC-Cin-025789	Ciona intestinalis	27.59	2.00e-29	121.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	51.89	4.00e-32	129.00
IUUC-Cne-027063	Cryptococcus neoformans	25.62	7.00e-24	103.00
IUUC-Dre-027907	Danio rerio	25.70	7.00e-40	156.00
IUUC-Dno-029225	Dasypus novemcinctus	25.62	7.00e-32	129.00
IUUC-Dor-031082	Dipodomys ordii	23.75	5.00e-12	63.90
IUUC-Dse-031308	Dothistroma septosporum	44.30	1.00e-101	361.00
IUUC-Dme-032189	Drosophila melanogaster	24.68	2.00e-30	124.00
IUUC-Ete-032247	Echinops telfairi	24.07	1.00e-24	105.00
IUUC-Eca-034285	Equus caballus	26.37	2.00e-32	131.00
IUUC-Eeu-035322	Erinaceus europaeus	23.88	1.00e-24	105.00
IUUC-Fca-036114	Felis catus	26.87	3.00e-33	134.00
IUUC-Fal-036891	Ficedula albicollis	26.98	2.00e-30	124.00
IUUC-Fox-037965	Fusarium oxysporum	47.42	2.00e-110	390.00
IUUC-Fso-038244	Fusarium solani	47.02	2.00e-108	384.00
IUUC-Gmo-039040	Gadus morhua	26.13	3.00e-40	157.00
IUUC-Ggr-040093	Gaeumannomyces graminis	43.42	2.00e-87	314.00
IUUC-Gga-040610	Gallus gallus	27.04	7.00e-39	152.00
IUUC-Gac-042117	Gasterosteus aculeatus	26.50	3.00e-37	147.00
IUUC-Gma-043425	Glycine max	29.94	4.00e-41	160.00
IUUC-Ggo-045179	Gorilla gorilla	26.87	1.00e-33	135.00
IUUC-Hsa-046114	Homo sapiens	26.87	5.00e-33	133.00
IUUC-Hvu-047331	Hordeum vulgare	29.75	6.00e-35	139.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.87	6.00e-32	129.00
IUUC-Kpa-049304	Komagataella pastoris	40.50	2.00e-92	330.00
IUUC-Lch-050655	Latimeria chalumnae	28.01	5.00e-29	119.00
IUUC-Lpe-051675	Leersia perrieri	30.32	9.00e-43	166.00
IUUC-Loc-052868	Lepisosteus oculatus	27.27	1.00e-38	152.00
IUUC-Lma-053258	Leptosphaeria maculans	80.47	0.00e+00	769.00
IUUC-Laf-053993	Loxodonta africana	24.89	2.00e-32	131.00
IUUC-Mcc-055128	Macaca mulatta	22.19	1.00e-16	79.00
IUUC-Meu-056501	Macropus eugenii	28.81	1.00e-32	131.00
IUUC-Mor-057114	Magnaporthe oryzae	49.25	3.00e-115	407.00
IUUC-Mpo-057463	Magnaporthe poae	44.78	1.00e-42	164.00
IUUC-Mtr-058367	Medicago truncatula	28.36	7.00e-34	136.00
IUUC-Mla-059107	Melampsora laricipopulina	27.25	9.00e-37	145.00
IUUC-Mga-059745	Meleagris gallopavo	27.13	4.00e-37	147.00
IUUC-Mvi-060362	Microbotryum violaceum	27.13	2.00e-34	138.00
IUUC-Mdo-062257	Monodelphis domestica	27.82	1.00e-37	148.00
IUUC-Mmu-063546	Mus musculus	27.11	6.00e-34	136.00
IUUC-Mac-065540	Musa acuminata	29.51	6.00e-39	153.00
IUUC-Mpu-066284	Mustela putorius furo	26.87	2.00e-33	135.00
IUUC-Mlu-067241	Myotis lucifugus	26.87	1.00e-33	135.00
IUUC-Nfi-068260	Neosartorya fischeri	53.21	2.00e-125	440.00
IUUC-Ncr-068719	Neurospora crassa	47.73	1.00e-108	384.00
IUUC-Nle-068981	Nomascus leucogenys	25.87	2.00e-33	134.00
IUUC-Opr-071218	Ochotona princeps	24.88	7.00e-31	126.00
IUUC-Ont-071646	Oreochromis niloticus	25.70	7.00e-36	142.00
IUUC-Oan-073453	Ornithorhynchus anatinus	25.75	3.00e-38	150.00
IUUC-Ocu-074008	Oryctolagus cuniculus	26.12	3.00e-33	134.00
IUUC-Oba-075712	Oryza barthii	27.45	4.00e-28	117.00
IUUC-Obr-076721	Oryza brachyantha	30.38	3.00e-44	171.00
IUUC-Ogl-077229	Oryza glaberrima	30.19	6.00e-44	169.00
IUUC-Ogu-078977	Oryza glumaepatula	27.02	9.00e-28	116.00
IUUC-Oin-079683	Oryza indica	29.98	4.00e-44	170.00
IUUC-Olo-080291	Oryza longistaminata	28.70	4.00e-26	109.00
IUUC-Ome-081834	Oryza meridionalis	30.51	8.00e-44	169.00
IUUC-Oni-082507	Oryza nivara	29.72	2.00e-37	147.00
IUUC-Opu-083396	Oryza punctata	30.17	4.00e-42	164.00
IUUC-Oru-085220	Oryza rufipogon	29.72	2.00e-37	147.00
IUUC-Osa-085767	Oryza sativa	29.98	4.00e-44	170.00
IUUC-Ola-087420	Oryzias latipes	26.08	3.00e-40	157.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.36	6.00e-29	120.00
IUUC-Oga-088264	Otolemur garnettii	26.12	4.00e-34	137.00
IUUC-Oar-089335	Ovis aries	26.12	4.00e-32	130.00
IUUC-Ptr-091320	Pan troglodytes	26.87	5.00e-33	133.00
IUUC-Pan-092833	Papio anubis	26.87	1.00e-32	132.00
IUUC-Psi-093504	Pelodiscus sinensis	26.85	1.00e-33	135.00
IUUC-Pma-094189	Petromyzon marinus	28.45	2.00e-37	148.00
IUUC-Ppa-095429	Physcomitrella patens	30.60	4.00e-42	164.00
IUUC-Pfo-096337	Poecilia formosa	25.86	2.00e-38	151.00
IUUC-Pab-097571	Pongo abelii	26.87	5.00e-33	133.00
IUUC-Pop-099977	Populus trichocarpa	29.50	2.00e-43	167.00
IUUC-Pca-100394	Procavia capensis	24.83	1.00e-28	118.00
IUUC-Ppe-101848	Prunus persica	31.53	2.00e-43	168.00
IUUC-Pva-102921	Pteropus vampyrus	23.37	2.00e-12	65.10
IUUC-Pgr-103637	Puccinia graminis	27.05	2.00e-38	151.00
IUUC-Ptt-103781	Puccinia triticina	26.77	2.00e-39	154.00
IUUC-Pte-104135	Pyrenophora teres	83.41	0.00e+00	727.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	79.66	0.00e+00	715.00
IUUC-Rno-105114	Rattus norvegicus	27.11	2.00e-33	135.00
IUUC-Sce-106401	Saccharomyces cerevisiae	40.95	7.00e-92	328.00
IUUC-Sha-107122	Sarcophilus harrisii	27.85	1.00e-31	128.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	34.89	6.00e-73	266.00
IUUC-Spo-108134	Schizosaccharomyces pombe	35.10	5.00e-69	253.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	49.37	2.00e-125	440.00
IUUC-Smo-108720	Selaginella moellendorffii	27.35	6.00e-34	136.00
IUUC-Sit-110354	Setaria italica	28.63	5.00e-39	153.00
IUUC-Sly-111023	Solanum lycopersicum	27.61	3.00e-39	154.00
IUUC-Stu-112169	Solanum tuberosum	28.31	1.00e-41	162.00
IUUC-Sbi-114193	Sorghum bicolor	28.57	1.00e-38	152.00
IUUC-Sre-115002	Sporisorium reilianum	26.24	9.00e-27	113.00
IUUC-Ssc-116066	Sus scrofa	26.37	8.00e-33	132.00
IUUC-Tgu-117048	Taeniopygia guttata	27.64	3.00e-36	144.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.12	1.00e-35	142.00
IUUC-Tca-121605	Theobroma cacao	29.27	1.00e-40	158.00
IUUC-Tre-121947	Trichoderma reesei	45.15	1.00e-103	368.00
IUUC-Tvi-122481	Trichoderma virens	45.57	2.00e-105	374.00
IUUC-Tae-123847	Triticum aestivum	29.23	4.00e-41	160.00
IUUC-Tur-126586	Triticum urartu	28.79	6.00e-38	149.00
IUUC-Tme-126900	Tuber melanosporum	41.81	2.00e-93	334.00
IUUC-Uma-129628	Ustilago maydis	25.25	2.00e-18	85.50
IUUC-Vpa-130260	Vicugna pacos	26.12	5.00e-32	130.00
IUUC-Vvi-131009	Vitis vinifera	30.43	3.00e-41	160.00
IUUC-Xtr-132083	Xenopus tropicalis	26.60	1.00e-36	145.00
IUUC-Xma-133094	Xiphophorus maculatus	25.85	8.00e-39	152.00
IUUC-Yli-134531	Yarrowia lipolytica	34.71	6.00e-58	216.00
IUUC-Zma-135509	Zea mays	28.42	1.00e-38	152.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence