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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007367
UUCD1 version UUC-ArT-00266
Ensembl Protein ID AT2G41500.1
UniProt Accession O22212; Q0WNB5; Q7GAP3; Q7Y1Z3; PRP4L_ARATH
Genbank Protein ID AAB84332.1; AAM14969.1; AEC09991.1; ANM62834.1; AAP40506.1; AAW80862.1; BAF01385.1
Protein Name U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Protein EMBRYO DEFECTIVE 2776; Protein LACHESIS
Genbank Nucleotide ID AC002510; AC004625; CP002685; CP002685; BT008700; BT020589; AK229530
Gene Name LIS; EMB2776; At2g41500; T26J13.9; T32G6.2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G41500 AT2G41500.1 AT2G41500.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.30e-36 122.6 421 453
UBD/Beta-Prp 4.00e-60 204.4 254 476
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH  +v++++f ++  +l+sG+ D+++++WDlr
   Q: 421  GHIKPVFSVNFsPNgYHLASGGEDNQCRIWDLR 453
           7999********77799**************97 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvtt.gkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
           ++ ++t   fs+d+++lat s +g +k+w++ +  ++++ l++h++  t+v fsp ++ l+t+s Drt+k+w  + g+ ++t++gh d++  ++f+ps
   Q: 254  DDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQvTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD-GTLLQTFEGHLDRLARVAFHPS 350
           5779999***********************9882456***********************************975.89******************** PP
   S: 106  gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt 203
           g++l ++s d+t r+wd++tg +l  +++gh+++v ++++++dg l +s++lD+  r+Wdl+tg+ +  ++g h ++v s++f++ng +l+sg++d++
   Q: 351  GKYLGTTSYDKTWRLWDINTGAELL-LQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQG-HIKPVFSVNFSPNGYHLASGGEDNQ 446
           *************************.*********************************************9.************************* PP
   S: 204  vklwdlqtgecvrtlnghtdnvksvrfspn 233
            ++wdl+  + +++  +h + v++v+  p+
   Q: 447  CRIWDLRMRKSLYIIPAHANLVSQVKYEPQ 476
           ************************998765 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Participates in pre-mRNA splicing. Part of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity). Essential for reproduction. In female gametophyte, is necessary for the egg cell and central cell fate determination and hence reproductive success. Involved in a mechanism that prevents accessory cells from adopting gametic cell fate (PubMed:17326723). Modulates egg cell signaling center that regulates the development of all female gametophytic cells (PubMed:22190635).
 Participates in pre-mRNA splicing. Part of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity). Essential for reproduction. In female gametophyte, is necessary for the egg cell and central cell fate determination and hence reproductive success. Involved in a mechanism that prevents accessory cells from adopting gametic cell fate (PubMed:17326723). Modulates egg cell signaling center that regulates the development of all female gametophytic cells (PubMed:22190635).
Protein Sequence
(Fasta)
MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR 60
PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER QEKALQDLLV KRRAAAMAVP 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007367|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTCGGCTTTC TCGCATCAAA TTTCCGTTTT TGCTACCGTC GTCTCTGGTC AGACTCAGAG 60
GTATGAACCA ACTTTCCTCT CTGATTTAGC TTCTCTTTGT TTCTCATAAA GATGGATTTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007367|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0747--Spliceosome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08799--PRP4
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00500--SFM
SM00320--WD40
Gene Ontology

GO:0016607--C:nuclear speck
GO:0005681--C:spliceosomal complex
GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0001709--P:cell fate determination
GO:0007267--P:cell-cell signaling
GO:0009553--P:embryo sac development
GO:0009560--P:embryo sac egg cell differentiation
GO:0000398--P:mRNA splicing, via spliceosome
KEGG ath:AT2G41500
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000771 Aegilops tauschii 64.65 3.00e-158 550.00
IUUC-Aml-001737 Ailuropoda melanoleuca 43.89 3.00e-109 387.00
IUUC-Atr-002828 Amborella trichopoda 63.30 4.00e-170 590.00
IUUC-Apl-003723 Anas platyrhynchos 44.10 1.00e-108 386.00
IUUC-Aca-004972 Anolis carolinensis 43.01 5.00e-107 380.00
IUUC-Aly-006531 Arabidopsis lyrata 91.01 0.00e+00 882.00
IUUC-Ago-007893 Ashbya gossypii 33.49 8.00e-55 207.00
IUUC-Acl-008236 Aspergillus clavatus 36.23 4.00e-74 271.00
IUUC-Afl-008522 Aspergillus flavus 37.65 6.00e-79 287.00
IUUC-Afu-008904 Aspergillus fumigatus 36.22 2.00e-78 285.00
IUUC-Ani-009198 Aspergillus nidulans 38.96 2.00e-81 296.00
IUUC-Ang-009662 Aspergillus niger 40.40 4.00e-84 304.00
IUUC-Aor-009881 Aspergillus oryzae 37.86 5.00e-79 287.00
IUUC-Ate-010333 Aspergillus terreus 37.87 1.00e-75 276.00
IUUC-Ame-011697 Astyanax mexicanus 41.69 3.00e-106 378.00
IUUC-Bgr-012254 Blumeria graminis 35.73 4.00e-79 288.00
IUUC-Bta-012615 Bos taurus 43.89 2.00e-109 389.00
IUUC-Bci-013720 Botrytis cinerea 38.46 6.00e-82 297.00
IUUC-Bdi-014302 Brachypodium distachyon 65.69 7.00e-169 586.00
IUUC-Bol-015594 Brassica oleracea 90.76 0.00e+00 844.00
IUUC-Bra-017465 Brassica rapa 84.89 0.00e+00 851.00
IUUC-Cel-018632 Caenorhabditis elegans 35.31 9.00e-72 263.00
IUUC-Cja-019747 Callithrix jacchus 43.89 2.00e-109 389.00
IUUC-Cfa-020288 Canis familiaris 43.89 3.00e-109 388.00
IUUC-Cpo-021440 Cavia porcellus 43.23 1.00e-108 386.00
IUUC-Cre-022716 Chlamydomonas reinhardtii 49.57 4.00e-96 343.00
IUUC-Csa-023139 Chlorocebus sabaeus 46.83 2.00e-90 324.00
IUUC-Cho-024481 Choloepus hoffmanni 42.89 9.00e-107 379.00
IUUC-Cin-025106 Ciona intestinalis 37.71 2.00e-92 332.00
IUUC-Csv-026087 Ciona savignyi 38.98 1.00e-94 339.00
IUUC-Cgl-026538 Colletotrichum gloeosporioides 34.70 6.00e-77 281.00
IUUC-Cne-026793 Cryptococcus neoformans 38.09 2.00e-86 312.00
IUUC-Dre-028723 Danio rerio 42.83 3.00e-106 378.00
IUUC-Dno-029299 Dasypus novemcinctus 43.67 8.00e-109 386.00
IUUC-Dse-031562 Dothistroma septosporum 35.09 3.00e-75 275.00
IUUC-Dme-031783 Drosophila melanogaster 39.46 1.00e-81 296.00
IUUC-Ete-032669 Echinops telfairi 43.89 8.00e-110 390.00
IUUC-Eca-033566 Equus caballus 43.89 4.00e-109 387.00
IUUC-Eeu-034524 Erinaceus europaeus 50.21 7.00e-70 257.00
IUUC-Fca-036215 Felis catus 43.89 2.00e-109 388.00
IUUC-Fal-037018 Ficedula albicollis 42.78 2.00e-89 322.00
IUUC-Fox-037936 Fusarium oxysporum 34.58 2.00e-71 262.00
IUUC-Fso-038366 Fusarium solani 35.26 1.00e-75 276.00
IUUC-Gmo-038966 Gadus morhua 41.55 6.00e-80 290.00
IUUC-Ggr-039942 Gaeumannomyces graminis 35.06 4.00e-69 254.00
IUUC-Gga-040797 Gallus gallus 44.32 3.00e-109 388.00
IUUC-Gac-042598 Gasterosteus aculeatus 41.24 5.00e-97 347.00
IUUC-Gma-044097 Glycine max 68.59 4.00e-170 590.00
IUUC-Ggo-044682 Gorilla gorilla 43.89 4.00e-109 387.00
IUUC-Hsa-045804 Homo sapiens 43.89 2.00e-109 389.00
IUUC-Hvu-047567 Hordeum vulgare 63.19 4.00e-153 533.00
IUUC-Itr-047882 Ictidomys tridecemlineatus 44.10 7.00e-110 390.00
IUUC-Kpa-049369 Komagataella pastoris 30.93 1.00e-51 196.00
IUUC-Lch-050074 Latimeria chalumnae 41.54 5.00e-94 337.00
IUUC-Lpe-051333 Leersia perrieri 65.00 1.00e-148 519.00
IUUC-Loc-052164 Lepisosteus oculatus 41.92 7.00e-107 380.00
IUUC-Lma-053088 Leptosphaeria maculans 37.47 2.00e-73 269.00
IUUC-Laf-053460 Loxodonta africana 43.89 2.00e-109 388.00
IUUC-Mcc-055859 Macaca mulatta 43.89 2.00e-109 388.00
IUUC-Meu-056134 Macropus eugenii 43.23 2.00e-107 382.00
IUUC-Mor-057251 Magnaporthe oryzae 36.21 2.00e-75 275.00
IUUC-Mpo-057375 Magnaporthe poae 41.31 3.00e-55 207.00
IUUC-Mtr-057656 Medicago truncatula 68.88 5.00e-157 546.00
IUUC-Mla-059145 Melampsora laricipopulina 40.77 1.00e-81 296.00
IUUC-Mga-059855 Meleagris gallopavo 44.10 1.00e-108 386.00
IUUC-Mvi-060372 Microbotryum violaceum 39.14 5.00e-75 274.00
IUUC-Mmr-060826 Microcebus murinus 44.10 1.00e-109 389.00
IUUC-Mdo-062748 Monodelphis domestica 43.01 4.00e-107 381.00
IUUC-Mmu-063351 Mus musculus 43.67 2.00e-108 385.00
IUUC-Mac-064846 Musa acuminata 66.29 2.00e-157 548.00
IUUC-Mpu-066006 Mustela putorius furo 43.89 2.00e-109 388.00
IUUC-Mlu-067398 Myotis lucifugus 43.89 3.00e-109 388.00
IUUC-Nfi-068399 Neosartorya fischeri 36.57 4.00e-80 291.00
IUUC-Ncr-068711 Neurospora crassa 36.84 7.00e-81 293.00
IUUC-Nle-069982 Nomascus leucogenys 43.89 2.00e-109 389.00
IUUC-Opr-070596 Ochotona princeps 43.89 2.00e-109 388.00
IUUC-Ont-072374 Oreochromis niloticus 43.26 1.00e-99 356.00
IUUC-Oan-073166 Ornithorhynchus anatinus 45.94 3.00e-94 337.00
IUUC-Ocu-074371 Oryctolagus cuniculus 43.67 7.00e-109 386.00
IUUC-Oba-075083 Oryza barthii 64.37 2.00e-158 551.00
IUUC-Obr-076405 Oryza brachyantha 65.12 4.00e-156 543.00
IUUC-Ogl-077683 Oryza glaberrima 64.37 3.00e-158 550.00
IUUC-Ogu-078486 Oryza glumaepatula 64.59 2.00e-158 551.00
IUUC-Oin-079679 Oryza indica 64.37 9.00e-164 569.00
IUUC-Olo-080243 Oryza longistaminata 64.38 1.00e-139 489.00
IUUC-Ome-081230 Oryza meridionalis 64.37 1.00e-163 568.00
IUUC-Oni-082961 Oryza nivara 64.37 1.00e-163 568.00
IUUC-Opu-083189 Oryza punctata 64.37 2.00e-162 564.00
IUUC-Oru-084353 Oryza rufipogon 65.32 3.00e-159 553.00
IUUC-Osa-085458 Oryza sativa 64.37 1.00e-163 568.00
IUUC-Ola-086940 Oryzias latipes 43.23 1.00e-105 376.00
IUUC-Olu-087580 Ostreococcus lucimarinus 38.03 1.00e-68 253.00
IUUC-Oga-088703 Otolemur garnettii 41.36 2.00e-102 365.00
IUUC-Oar-089829 Ovis aries 43.67 9.00e-109 386.00
IUUC-Ptr-090838 Pan troglodytes 43.89 2.00e-109 389.00
IUUC-Pan-092261 Papio anubis 43.57 8.00e-108 383.00
IUUC-Psi-093020 Pelodiscus sinensis 42.14 2.00e-107 382.00
IUUC-Pno-094858 Phaeosphaeria nodorum 37.16 2.00e-73 269.00
IUUC-Ppa-095531 Physcomitrella patens 59.67 2.00e-159 555.00
IUUC-Pfo-096812 Poecilia formosa 40.14 1.00e-83 303.00
IUUC-Pab-097805 Pongo abelii 45.66 2.00e-90 325.00
IUUC-Pop-100051 Populus trichocarpa 68.02 2.00e-177 614.00
IUUC-Pca-100152 Procavia capensis 43.67 4.00e-109 387.00
IUUC-Ppe-101244 Prunus persica 67.41 8.00e-166 575.00
IUUC-Pva-102529 Pteropus vampyrus 42.14 5.00e-102 364.00
IUUC-Pgr-103550 Puccinia graminis 35.52 2.00e-82 299.00
IUUC-Ptt-103951 Puccinia triticina 31.52 5.00e-69 254.00
IUUC-Pte-104151 Pyrenophora teres 35.24 1.00e-68 253.00
IUUC-Pyt-104571 Pyrenophora triticirepentis 36.02 1.00e-69 256.00
IUUC-Rno-105747 Rattus norvegicus 43.45 9.00e-108 383.00
IUUC-Sce-106418 Saccharomyces cerevisiae 31.26 6.00e-59 220.00
IUUC-Sha-107334 Sarcophilus harrisii 43.23 2.00e-107 382.00
IUUC-Sja-107794 Schizosaccharomyces japonicus 34.24 1.00e-64 239.00
IUUC-Spo-108189 Schizosaccharomyces pombe 39.45 4.00e-84 304.00
IUUC-Ssl-108550 Sclerotinia sclerotiorum 37.61 1.00e-80 293.00
IUUC-Smo-109578 Selaginella moellendorffii 57.24 5.00e-147 513.00
IUUC-Sit-110102 Setaria italica 64.30 2.00e-160 558.00
IUUC-Sly-111668 Solanum lycopersicum 68.07 8.00e-173 599.00
IUUC-Stu-111928 Solanum tuberosum 68.07 4.00e-173 600.00
IUUC-Sar-113266 Sorex araneus 43.98 1.00e-89 323.00
IUUC-Sbi-114134 Sorghum bicolor 63.64 2.00e-160 558.00
IUUC-Sre-115114 Sporisorium reilianum 38.79 5.00e-83 301.00
IUUC-Ssc-115443 Sus scrofa 43.89 3.00e-109 388.00
IUUC-Tgu-117157 Taeniopygia guttata 44.10 5.00e-109 387.00
IUUC-Tru-118587 Takifugu rubripes 44.91 5.00e-105 374.00
IUUC-Tsy-119157 Tarsius syrichta 46.22 1.00e-96 346.00
IUUC-Tni-120427 Tetraodon nigroviridis 44.19 2.00e-103 369.00
IUUC-Tca-121368 Theobroma cacao 71.20 0.00e+00 668.00
IUUC-Tre-122074 Trichoderma reesei 35.88 1.00e-74 273.00
IUUC-Tvi-122349 Trichoderma virens 35.20 1.00e-74 273.00
IUUC-Tae-125651 Triticum aestivum 64.48 2.00e-162 564.00
IUUC-Tur-126532 Triticum urartu 65.51 2.00e-144 504.00
IUUC-Tme-126951 Tuber melanosporum 39.46 3.00e-77 281.00
IUUC-Tbe-128136 Tupaia belangeri 40.39 4.00e-95 341.00
IUUC-Ttr-129169 Tursiops truncatus 36.72 4.00e-50 191.00
IUUC-Uma-129399 Ustilago maydis 36.55 3.00e-80 291.00
IUUC-Vda-129842 Verticillium dahliae 36.73 5.00e-80 291.00
IUUC-Vpa-130440 Vicugna pacos 43.89 1.00e-109 389.00
IUUC-Vvi-131075 Vitis vinifera 68.79 3.00e-174 604.00
IUUC-Xma-133002 Xiphophorus maculatus 45.66 2.00e-90 324.00
IUUC-Yli-134569 Yarrowia lipolytica 37.20 3.00e-74 271.00
IUUC-Zma-135799 Zea mays 61.81 5.00e-160 556.00
Created Date 25-Jun-2017

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