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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007517
UUCD1 version UUC-ArT-00117
Ensembl Protein ID AT5G22750.1
UniProt Accession Q9FNI6; Q0WQK0; SM3L2_ARATH
Genbank Protein ID BAB11681.1; AED93070.1; BAF00599.1
Protein Name Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
Genbank Nucleotide ID AB006699; CP002688; AK228695
Gene Name At5g22750; MDJ22.17
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G22750 AT5G22750.1 AT5G22750.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 23314815
Classification
Family E-value Score Start End
E3 activity/RING/RING 2.70e-07 31.9 794 834
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
           C+iCle ++d  +++pC H  +++Cl   w       s++ +CP+Cr
   Q: 794  CPICLEALED-AVLTPCAHRLCRECLlASW-----RNSTSGLCPVCR 834
           **********.888***********98999.....5788888****8 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair (By similarity).
 Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair (By similarity).
Protein Sequence
(Fasta)
MGTKVSDDLV STVRSVVGSD YSDMDIIRAL HMANHDPTAA INIIFDTPSF AKPDVATPTP 60
SGSNGGKRVD SGLKGCTFGD SGSVGANHRV EEENESVNGG GEESVSGNEW WFVGCSELAG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007517|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTGAATAAAA AAAACAATAT AATGGCGGGA ATTTGAGAGA CTCGTCGCTA ATTTACGCGC 60
GTTTCTCGGG TCCGGCAGAT TTCGTACGCC GTCGTCGTCG ATCTACTTCA ATTTCTATAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007517|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR014905--HIRAN
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00271--Helicase_C
PF08797--HIRAN
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
SM00910--HIRAN
SM00184--RING
Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0004386--F:helicase activity
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
GO:0009294--P:DNA mediated transformation
GO:0000724--P:double-strand break repair via homologous recombination
GO:0045003--P:double-strand break repair via synthesis-dependent strand annealing
KEGG ath:AT5G22750
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-003139 Amborella trichopoda 66.76 0.00e+00 1410.00
IUUC-Apl-003679 Anas platyrhynchos 33.75 3.00e-76 279.00
IUUC-Aly-006331 Arabidopsis lyrata 96.50 0.00e+00 1978.00
IUUC-Afl-008514 Aspergillus flavus 31.28 3.00e-131 462.00
IUUC-Afu-009055 Aspergillus fumigatus 31.17 3.00e-133 469.00
IUUC-Ani-009340 Aspergillus nidulans 32.23 1.00e-124 440.00
IUUC-Aor-010158 Aspergillus oryzae 31.19 9.00e-131 461.00
IUUC-Ate-010536 Aspergillus terreus 30.21 7.00e-117 414.00
IUUC-Bgr-012147 Blumeria graminis 33.69 5.00e-136 478.00
IUUC-Bci-013741 Botrytis cinerea 33.37 1.00e-142 499.00
IUUC-Bdi-014646 Brachypodium distachyon 65.08 0.00e+00 1306.00
IUUC-Bol-015484 Brassica oleracea 85.51 0.00e+00 1726.00
IUUC-Bra-016925 Brassica rapa 85.84 0.00e+00 1763.00
IUUC-Cre-022824 Chlamydomonas reinhardtii 27.46 1.00e-59 225.00
IUUC-Csv-026168 Ciona savignyi 27.64 5.00e-60 225.00
IUUC-Cgl-026606 Colletotrichum gloeosporioides 37.98 2.00e-139 489.00
IUUC-Cme-027110 Cyanidioschyzon merolae 38.18 1.00e-129 457.00
IUUC-Eeu-034597 Erinaceus europaeus 32.85 2.00e-65 243.00
IUUC-Fal-037486 Ficedula albicollis 33.95 2.00e-76 280.00
IUUC-Fox-038039 Fusarium oxysporum 37.45 5.00e-135 475.00
IUUC-Fso-038179 Fusarium solani 33.79 2.00e-148 519.00
IUUC-Ggr-039735 Gaeumannomyces graminis 34.64 6.00e-136 478.00
IUUC-Gga-040472 Gallus gallus 32.47 1.00e-45 178.00
IUUC-Gma-042995 Glycine max 70.90 0.00e+00 1489.00
IUUC-Hvu-047495 Hordeum vulgare 63.37 0.00e+00 1066.00
IUUC-Lpe-051584 Leersia perrieri 63.11 0.00e+00 1214.00
IUUC-Mor-057210 Magnaporthe oryzae 33.47 7.00e-141 494.00
IUUC-Mpo-057407 Magnaporthe poae 33.37 1.00e-142 500.00
IUUC-Mtr-058565 Medicago truncatula 67.66 0.00e+00 1412.00
IUUC-Mga-059553 Meleagris gallopavo 32.71 9.00e-45 175.00
IUUC-Mvi-060322 Microbotryum violaceum 33.15 3.00e-92 332.00
IUUC-Mac-065174 Musa acuminata 56.94 0.00e+00 697.00
IUUC-Nfi-068354 Neosartorya fischeri 30.91 9.00e-133 467.00
IUUC-Ncr-068844 Neurospora crassa 32.41 2.00e-137 483.00
IUUC-Oba-075937 Oryza barthii 65.80 0.00e+00 1185.00
IUUC-Obr-076403 Oryza brachyantha 65.35 0.00e+00 1263.00
IUUC-Ogl-077573 Oryza glaberrima 64.68 0.00e+00 1323.00
IUUC-Ogu-077957 Oryza glumaepatula 65.87 0.00e+00 1201.00
IUUC-Oin-079146 Oryza indica 69.57 0.00e+00 1293.00
IUUC-Olo-080437 Oryza longistaminata 58.82 0.00e+00 1029.00
IUUC-Ome-081448 Oryza meridionalis 63.52 0.00e+00 1262.00
IUUC-Oni-082389 Oryza nivara 65.21 0.00e+00 1174.00
IUUC-Opu-083322 Oryza punctata 67.49 0.00e+00 1209.00
IUUC-Oru-085066 Oryza rufipogon 65.59 0.00e+00 1197.00
IUUC-Osa-085686 Oryza sativa 71.05 0.00e+00 1171.00
IUUC-Pno-094916 Phaeosphaeria nodorum 34.29 4.00e-135 475.00
IUUC-Ppa-095877 Physcomitrella patens 57.25 0.00e+00 1064.00
IUUC-Pop-099320 Populus trichocarpa 73.01 0.00e+00 1505.00
IUUC-Ppe-101820 Prunus persica 72.55 0.00e+00 1496.00
IUUC-Ptt-103829 Puccinia triticina 28.59 8.00e-98 351.00
IUUC-Spo-108026 Schizosaccharomyces pombe 32.85 2.00e-136 479.00
IUUC-Ssl-108388 Sclerotinia sclerotiorum 33.02 2.00e-142 499.00
IUUC-Smo-108977 Selaginella moellendorffii 72.31 8.00e-162 562.00
IUUC-Sit-110076 Setaria italica 65.01 0.00e+00 1281.00
IUUC-Sly-111908 Solanum lycopersicum 69.55 0.00e+00 1468.00
IUUC-Sbi-113927 Sorghum bicolor 63.59 0.00e+00 1295.00
IUUC-Sre-115131 Sporisorium reilianum 31.73 3.00e-127 449.00
IUUC-Tca-121137 Theobroma cacao 72.88 0.00e+00 1551.00
IUUC-Tre-121896 Trichoderma reesei 33.47 2.00e-143 503.00
IUUC-Tvi-122597 Trichoderma virens 33.26 8.00e-143 501.00
IUUC-Tae-124722 Triticum aestivum 67.62 0.00e+00 1273.00
IUUC-Tur-126433 Triticum urartu 66.85 0.00e+00 981.00
IUUC-Tme-126953 Tuber melanosporum 32.16 1.00e-133 470.00
IUUC-Tbe-127642 Tupaia belangeri 38.46 8.00e-45 175.00
IUUC-Vda-129849 Verticillium dahliae 35.19 7.00e-124 437.00
IUUC-Vvi-130943 Vitis vinifera 71.17 0.00e+00 1519.00
Created Date 25-Jun-2017

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