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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007111
UUCD1 version UUC-ArT-01173
Ensembl Protein ID AT3G49180.1
UniProt Accession Q9M3B4; Q8LBC4; RID3_ARATH
Genbank Protein ID CAB66397.1; AEE78508.1; AAO42870.1; BAE99952.1; AAM64848.1
Protein Name Protein ROOT INITIATION DEFECTIVE 3; Root initiation defective 3 protein; WD-40 repeat-containing protein RID3
Genbank Nucleotide ID AL132956; CP002686; BT004624; AK227986; AY087296
Gene Name RID3; At3g49180; F2K15.40
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G49180 AT3G49180.1 AT3G49180.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-27 95.8 265 298
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
            +tcla+  d +ll+sGs Dg++ vWD+++ + +
   Q: 265  AITCLAYcADgNLLISGSEDGVVCVWDPKSLRHV 298
           59******666****************9887665 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Involved in meristem development. Acts as negative regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation.
 Involved in meristem development. Acts as negative regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation.
Protein Sequence
(Fasta)
MEITVIASSS IDEGIGSWDL KTGTEQLQFK PCASPAHGLT AVGEKFLASS QLSARNTSGS 60
IFYWSWTKPQ AEVKSYPVEP IKALAANNEG TYLVGGGISG DIYLWEVATG KLLKKWHGHY 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007111|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TATAGATATC ACAAAACCCA GACTTGGAAT CAGTTTCTCT TTACTTCCCT CTTTCTCTGA 60
GCTATGGAGA TTACTGTAAT CGCTTCTTCC TCAATCGATG AAGGAATTGG AAGTTGGGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007111|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:1902184--P:negative regulation of shoot apical meristem development
KEGG ath:AT3G49180
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001040 Aegilops tauschii 50.17 3.00e-77 281.00
IUUC-Aml-001819 Ailuropoda melanoleuca 30.13 6.00e-26 111.00
IUUC-Atr-002688 Amborella trichopoda 48.90 1.00e-105 375.00
IUUC-Aly-006061 Arabidopsis lyrata 88.61 0.00e+00 800.00
IUUC-Acl-008357 Aspergillus clavatus 28.69 4.00e-22 99.00
IUUC-Afl-008564 Aspergillus flavus 26.92 6.00e-21 95.10
IUUC-Afu-009113 Aspergillus fumigatus 29.01 1.00e-22 100.00
IUUC-Ani-009132 Aspergillus nidulans 28.23 4.00e-23 102.00
IUUC-Ang-009586 Aspergillus niger 29.66 2.00e-23 102.00
IUUC-Aor-009882 Aspergillus oryzae 26.64 6.00e-21 95.10
IUUC-Ame-010912 Astyanax mexicanus 29.48 2.00e-32 132.00
IUUC-Bta-013402 Bos taurus 31.09 5.00e-30 124.00
IUUC-Bci-013791 Botrytis cinerea 27.23 5.00e-16 78.20
IUUC-Bdi-015054 Brachypodium distachyon 42.82 1.00e-88 319.00
IUUC-Bol-016342 Brassica oleracea 78.15 0.00e+00 637.00
IUUC-Bra-016967 Brassica rapa 77.91 0.00e+00 635.00
IUUC-Cja-019758 Callithrix jacchus 29.62 2.00e-29 122.00
IUUC-Cfa-020495 Canis familiaris 33.20 2.00e-26 112.00
IUUC-Cpo-021438 Cavia porcellus 32.26 6.00e-33 134.00
IUUC-Csa-023416 Chlorocebus sabaeus 30.77 6.00e-30 124.00
IUUC-Csv-025918 Ciona savignyi 26.07 1.00e-22 100.00
IUUC-Cgl-026618 Colletotrichum gloeosporioides 26.05 6.00e-20 91.30
IUUC-Cne-026843 Cryptococcus neoformans 25.43 2.00e-21 96.30
IUUC-Dre-027560 Danio rerio 29.49 5.00e-32 131.00
IUUC-Dno-029315 Dasypus novemcinctus 33.33 2.00e-38 152.00
IUUC-Dor-030935 Dipodomys ordii 31.01 2.00e-35 142.00
IUUC-Dse-031492 Dothistroma septosporum 26.22 2.00e-24 106.00
IUUC-Dme-032059 Drosophila melanogaster 32.02 3.00e-38 152.00
IUUC-Fca-036068 Felis catus 31.41 4.00e-27 115.00
IUUC-Fal-037467 Ficedula albicollis 32.95 1.00e-33 136.00
IUUC-Fox-037903 Fusarium oxysporum 27.54 2.00e-23 103.00
IUUC-Gmo-039323 Gadus morhua 28.79 1.00e-22 100.00
IUUC-Ggr-040050 Gaeumannomyces graminis 26.87 4.00e-10 58.50
IUUC-Gga-040563 Gallus gallus 32.95 7.00e-27 114.00
IUUC-Gac-042641 Gasterosteus aculeatus 31.41 2.00e-32 132.00
IUUC-Gma-043856 Glycine max 54.19 4.00e-139 487.00
IUUC-Ggo-045137 Gorilla gorilla 31.09 1.00e-25 110.00
IUUC-Hsa-046335 Homo sapiens 30.77 4.00e-25 108.00
IUUC-Hvu-047685 Hordeum vulgare 48.59 3.00e-81 294.00
IUUC-Itr-048032 Ictidomys tridecemlineatus 30.13 4.00e-35 141.00
IUUC-Kpa-049129 Komagataella pastoris 27.78 7.00e-28 117.00
IUUC-Lch-049532 Latimeria chalumnae 31.72 8.00e-36 144.00
IUUC-Lpe-051321 Leersia perrieri 44.24 1.00e-75 276.00
IUUC-Loc-052471 Lepisosteus oculatus 27.68 2.00e-24 105.00
IUUC-Lma-053091 Leptosphaeria maculans 24.57 1.00e-19 90.90
IUUC-Laf-054331 Loxodonta africana 30.97 3.00e-28 118.00
IUUC-Mcc-055803 Macaca mulatta 30.77 6.00e-30 124.00
IUUC-Meu-056090 Macropus eugenii 30.55 4.00e-34 138.00
IUUC-Mor-057160 Magnaporthe oryzae 29.33 2.00e-18 85.90
IUUC-Mtr-058800 Medicago truncatula 55.20 1.00e-139 489.00
IUUC-Mla-058943 Melampsora laricipopulina 32.74 3.00e-21 95.90
IUUC-Mga-059282 Meleagris gallopavo 31.30 3.00e-30 125.00
IUUC-Mvi-060315 Microbotryum violaceum 35.59 1.00e-25 110.00
IUUC-Mmr-061127 Microcebus murinus 30.77 4.00e-30 125.00
IUUC-Mdo-062350 Monodelphis domestica 30.55 9.00e-34 137.00
IUUC-Mmu-063706 Mus musculus 31.31 2.00e-33 135.00
IUUC-Mac-065066 Musa acuminata 59.61 9.00e-74 268.00
IUUC-Mpu-066711 Mustela putorius furo 31.09 4.00e-35 141.00
IUUC-Mlu-068121 Myotis lucifugus 31.98 9.00e-29 120.00
IUUC-Nfi-068454 Neosartorya fischeri 28.63 4.00e-22 99.00
IUUC-Ncr-068914 Neurospora crassa 27.27 2.00e-18 85.90
IUUC-Nle-069518 Nomascus leucogenys 30.82 3.00e-27 115.00
IUUC-Ont-071435 Oreochromis niloticus 34.08 6.00e-32 130.00
IUUC-Oba-075873 Oryza barthii 40.78 2.00e-90 325.00
IUUC-Obr-076097 Oryza brachyantha 34.31 2.00e-47 182.00
IUUC-Ogl-077840 Oryza glaberrima 40.88 5.00e-92 330.00
IUUC-Ogu-077988 Oryza glumaepatula 40.78 2.00e-90 325.00
IUUC-Oin-079237 Oryza indica 35.95 3.00e-54 204.00
IUUC-Olo-080415 Oryza longistaminata 40.14 8.00e-87 314.00
IUUC-Ome-081952 Oryza meridionalis 41.24 2.00e-90 325.00
IUUC-Oni-082300 Oryza nivara 40.78 2.00e-90 325.00
IUUC-Opu-083436 Oryza punctata 34.76 7.00e-51 194.00
IUUC-Oru-085164 Oryza rufipogon 41.38 2.00e-91 328.00
IUUC-Osa-086129 Oryza sativa 40.88 1.00e-89 323.00
IUUC-Ola-086571 Oryzias latipes 31.13 2.00e-32 132.00
IUUC-Oga-088561 Otolemur garnettii 31.29 1.00e-31 129.00
IUUC-Oar-090131 Ovis aries 31.66 2.00e-24 106.00
IUUC-Ptr-091301 Pan troglodytes 25.99 3.00e-20 92.00
IUUC-Pan-092810 Papio anubis 30.77 4.00e-30 125.00
IUUC-Psi-093091 Pelodiscus sinensis 31.47 2.00e-24 105.00
IUUC-Ppa-095317 Physcomitrella patens 39.84 3.00e-60 225.00
IUUC-Pfo-096996 Poecilia formosa 32.69 6.00e-33 134.00
IUUC-Pab-097747 Pongo abelii 29.81 4.00e-28 118.00
IUUC-Pop-099609 Populus trichocarpa 56.66 1.00e-143 501.00
IUUC-Pca-100972 Procavia capensis 31.83 3.00e-25 108.00
IUUC-Ppe-101904 Prunus persica 55.41 2.00e-140 491.00
IUUC-Pva-102700 Pteropus vampyrus 31.14 1.00e-17 84.00
IUUC-Pgr-103616 Puccinia graminis 36.26 2.00e-24 106.00
IUUC-Ptt-103954 Puccinia triticina 35.71 5.00e-24 105.00
IUUC-Pte-104120 Pyrenophora teres 23.34 1.00e-16 80.90
IUUC-Pyt-104558 Pyrenophora triticirepentis 23.94 4.00e-17 82.40
IUUC-Rno-104933 Rattus norvegicus 31.73 2.00e-34 139.00
IUUC-Sha-107636 Sarcophilus harrisii 30.55 8.00e-36 144.00
IUUC-Sja-107783 Schizosaccharomyces japonicus 26.43 2.00e-25 109.00
IUUC-Spo-108192 Schizosaccharomyces pombe 26.88 3.00e-24 105.00
IUUC-Smo-109498 Selaginella moellendorffii 41.69 5.00e-84 304.00
IUUC-Sit-110770 Setaria italica 40.86 2.00e-84 305.00
IUUC-Sly-111453 Solanum lycopersicum 55.38 1.00e-139 488.00
IUUC-Stu-112384 Solanum tuberosum 56.11 2.00e-127 449.00
IUUC-Sbi-113952 Sorghum bicolor 40.38 3.00e-86 311.00
IUUC-Sre-115223 Sporisorium reilianum 32.98 1.00e-22 100.00
IUUC-Ssc-115627 Sus scrofa 30.45 7.00e-29 120.00
IUUC-Tgu-117404 Taeniopygia guttata 33.33 4.00e-33 134.00
IUUC-Tru-117629 Takifugu rubripes 32.27 1.00e-30 126.00
IUUC-Tni-119839 Tetraodon nigroviridis 30.13 5.00e-23 101.00
IUUC-Tca-121766 Theobroma cacao 59.51 4.00e-154 536.00
IUUC-Tre-122047 Trichoderma reesei 25.80 6.00e-23 100.00
IUUC-Tvi-122668 Trichoderma virens 25.87 7.00e-22 97.40
IUUC-Tae-125258 Triticum aestivum 43.18 1.00e-78 286.00
IUUC-Tur-126673 Triticum urartu 40.10 4.00e-69 254.00
IUUC-Tme-127070 Tuber melanosporum 25.77 2.00e-25 109.00
IUUC-Ttr-128735 Tursiops truncatus 30.77 1.00e-26 113.00
IUUC-Uma-129521 Ustilago maydis 32.64 2.00e-21 97.10
IUUC-Vvi-130872 Vitis vinifera 55.17 1.00e-137 482.00
IUUC-Xtr-131838 Xenopus tropicalis 37.30 1.00e-35 143.00
IUUC-Xma-134106 Xiphophorus maculatus 32.14 1.00e-31 129.00
IUUC-Yli-134551 Yarrowia lipolytica 25.78 5.00e-20 91.30
IUUC-Zma-134703 Zea mays 40.19 4.00e-83 301.00
Created Date 25-Jun-2017

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