iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-027919

Ensembl Protein ID

ENSDARP00000121702.1

UniProt Accession

F1R3Q7; F1R3Q7_DANRE

Genbank Protein ID

ENSDARP00000121702

Protein Name

Ribosomal RNA-processing 9, small subunit (SSU) processome component, homolog (yeast)

Genbank Nucleotide ID

BX248230

Gene Name

rrp9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000041991.6	ENSDART00000135888.1	ENSDARP00000121702.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-34	116.3	232	264
UBD/Beta-Prp	3.60e-60	204.6	141	400

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH + +++laf  + ++l s+s+D +ikvW+++
   Q: 232  GHRGAISGLAFrRGtHTLYSASHDRSIKVWSVD 264
           8***********55588*************985 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheae........vtavkfspdgkilvtgseDrtikvwdlstgkcvht 89
           hk ++tc+ ++pd+++++++s+d +i+ wdv++gk+++++ g  ++        + ++ +s+dgk+l++g   ++i +wd++t+k + +
   Q: 141  HKLPVTCLVITPDEKHIFSASKDCSIIKWDVESGKKVQKIAGGRKGtedchtahILCMAISSDGKYLASGDMNKHIMIWDPETCKHLFK 229
           8899********************************888887777778888888*********************************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh   +  l+f + +++l s+shdr i+vw ++++  +e tl gh+++++++   + ++++ +G+ Drtvr+W+++ ++ l  + g 
   Q: 230  FTGHRGAISGLAFRRGTHTLYSASHDRSIKVWSVDENAYVE-TLFGHQDAITGLDCLSRERCVTTGGRDRTVRVWKIAEESQL-VFHG- 315
           ***************99***********************9.***********************************766666.6888. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght...........dnvksvrfspnderlvsgssDgsiriWdlrs 253
           h++s+ ++++  + +++v+g++dg v +w + +++ + +++               +v+sv+++ n++ ++sgs+  s+++W + +
   Q: 316  HEGSIDCVQLINE-EHMVTGGDDGAVSIWTVNKKKPLSSVKQAHgvrgsagleqpYWVSSVAALHNSDTVASGSHNSSVQLWKCGQ 400
           *********9886.7*********************88888766688***********************************8765 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MSSFFIKKKL VSSATNKGDL KRKSNTDDGK GRSKRFSKRM NEEISSDSEN ESADPGRKQQ 60
ENEEDEIEET AQEKKLRLAK LYLDQLREEE DKKAEEESFE ADLIAGRLQE DVLEQKGKLQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGTTTGTGA CCATGTGAGT GCCAGCAGAG AGCACTAAAT AAACTCAAAC ATCCTCAAAT 60
TACTTCTAAA AATCAGTTAA GTAAAAACGC CATCATGTCG TCCTTCTTCA TAAAGAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000586	Aegilops tauschii	34.10	2.00e-62	233.00
IUUC-Aml-002072	Ailuropoda melanoleuca	66.28	7.00e-162	563.00
IUUC-Atr-002824	Amborella trichopoda	38.09	3.00e-77	282.00
IUUC-Apl-003264	Anas platyrhynchos	68.29	6.00e-148	517.00
IUUC-Aca-004898	Anolis carolinensis	74.55	3.00e-168	585.00
IUUC-Aly-006383	Arabidopsis lyrata	37.97	9.00e-64	237.00
IUUC-Ath-007119	Arabidopsis thaliana	37.83	2.00e-74	273.00
IUUC-Ago-007710	Ashbya gossypii	30.38	2.00e-56	213.00
IUUC-Acl-008345	Aspergillus clavatus	34.85	5.00e-59	222.00
IUUC-Afl-008718	Aspergillus flavus	35.25	3.00e-57	216.00
IUUC-Afu-008966	Aspergillus fumigatus	31.22	1.00e-53	204.00
IUUC-Ani-009214	Aspergillus nidulans	32.24	4.00e-58	219.00
IUUC-Ang-009774	Aspergillus niger	35.28	1.00e-60	227.00
IUUC-Aor-009956	Aspergillus oryzae	35.25	3.00e-57	216.00
IUUC-Ate-010449	Aspergillus terreus	33.42	2.00e-56	213.00
IUUC-Ame-011860	Astyanax mexicanus	84.50	0.00e+00	681.00
IUUC-Bgr-012213	Blumeria graminis	33.91	5.00e-67	248.00
IUUC-Bta-012698	Bos taurus	69.41	6.00e-162	563.00
IUUC-Bci-013973	Botrytis cinerea	31.26	1.00e-67	250.00
IUUC-Bdi-014790	Brachypodium distachyon	37.01	1.00e-68	254.00
IUUC-Bol-016068	Brassica oleracea	39.74	7.00e-67	248.00
IUUC-Bra-017410	Brassica rapa	38.95	2.00e-62	233.00
IUUC-Cel-018616	Caenorhabditis elegans	37.53	6.00e-77	281.00
IUUC-Cja-019532	Callithrix jacchus	68.19	1.00e-159	556.00
IUUC-Cfa-020961	Canis familiaris	63.93	1.00e-153	536.00
IUUC-Cpo-021527	Cavia porcellus	64.36	4.00e-156	544.00
IUUC-Csa-023106	Chlorocebus sabaeus	68.45	6.00e-158	550.00
IUUC-Cin-025670	Ciona intestinalis	51.03	2.00e-121	429.00
IUUC-Csv-026172	Ciona savignyi	52.31	3.00e-118	418.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	36.58	6.00e-73	268.00
IUUC-Cne-027070	Cryptococcus neoformans	30.17	6.00e-49	188.00
IUUC-Cme-027125	Cyanidioschyzon merolae	29.48	3.00e-43	169.00
IUUC-Dno-029684	Dasypus novemcinctus	67.81	2.00e-122	432.00
IUUC-Dor-030363	Dipodomys ordii	63.78	6.00e-77	281.00
IUUC-Dse-031503	Dothistroma septosporum	34.53	8.00e-64	238.00
IUUC-Dme-031979	Drosophila melanogaster	44.70	2.00e-98	353.00
IUUC-Eca-033735	Equus caballus	68.54	2.00e-157	548.00
IUUC-Fca-036193	Felis catus	67.93	1.00e-158	553.00
IUUC-Fal-037058	Ficedula albicollis	68.51	3.00e-160	558.00
IUUC-Fox-038036	Fusarium oxysporum	34.90	7.00e-69	254.00
IUUC-Fso-038298	Fusarium solani	35.48	1.00e-70	261.00
IUUC-Gmo-038796	Gadus morhua	70.68	4.00e-165	574.00
IUUC-Ggr-040074	Gaeumannomyces graminis	31.66	8.00e-55	208.00
IUUC-Gga-040743	Gallus gallus	71.32	3.00e-120	424.00
IUUC-Gac-042583	Gasterosteus aculeatus	68.61	0.00e+00	671.00
IUUC-Gma-042659	Glycine max	40.61	1.00e-83	304.00
IUUC-Ggo-045543	Gorilla gorilla	68.45	4.00e-159	554.00
IUUC-Hsa-047017	Homo sapiens	68.36	2.00e-159	555.00
IUUC-Hvu-047173	Hordeum vulgare	37.15	3.00e-74	272.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	66.07	5.00e-164	570.00
IUUC-Kpa-049262	Komagataella pastoris	33.13	8.00e-61	228.00
IUUC-Lch-050566	Latimeria chalumnae	69.53	8.00e-158	550.00
IUUC-Lpe-051651	Leersia perrieri	37.15	1.00e-73	270.00
IUUC-Loc-051997	Lepisosteus oculatus	74.84	0.00e+00	647.00
IUUC-Lma-053182	Leptosphaeria maculans	31.38	4.00e-60	226.00
IUUC-Laf-054105	Loxodonta africana	68.70	2.00e-157	548.00
IUUC-Mcc-055215	Macaca mulatta	68.45	3.00e-158	551.00
IUUC-Meu-055943	Macropus eugenii	66.75	4.00e-154	537.00
IUUC-Mor-057069	Magnaporthe oryzae	32.12	5.00e-66	245.00
IUUC-Mpo-057358	Magnaporthe poae	32.09	2.00e-52	200.00
IUUC-Mtr-058209	Medicago truncatula	40.25	1.00e-81	297.00
IUUC-Mla-059043	Melampsora laricipopulina	29.83	7.00e-51	195.00
IUUC-Mga-060024	Meleagris gallopavo	68.09	5.00e-136	477.00
IUUC-Mvi-060371	Microbotryum violaceum	33.53	2.00e-70	260.00
IUUC-Mmr-061403	Microcebus murinus	68.70	1.00e-161	562.00
IUUC-Mdo-063026	Monodelphis domestica	68.91	4.00e-156	544.00
IUUC-Mmu-063646	Mus musculus	66.74	3.00e-156	545.00
IUUC-Mac-064801	Musa acuminata	40.27	2.00e-84	306.00
IUUC-Mpu-065760	Mustela putorius furo	68.61	8.00e-160	556.00
IUUC-Mlu-067963	Myotis lucifugus	67.30	1.00e-155	542.00
IUUC-Nfi-068288	Neosartorya fischeri	33.33	4.00e-57	216.00
IUUC-Ncr-068679	Neurospora crassa	36.27	9.00e-61	228.00
IUUC-Nle-069766	Nomascus leucogenys	63.71	1.00e-140	493.00
IUUC-Opr-070906	Ochotona princeps	68.19	6.00e-157	547.00
IUUC-Ont-071661	Oreochromis niloticus	75.16	0.00e+00	692.00
IUUC-Oan-073465	Ornithorhynchus anatinus	53.97	3.00e-119	422.00
IUUC-Ocu-074263	Oryctolagus cuniculus	67.94	2.00e-157	549.00
IUUC-Oba-075607	Oryza barthii	38.59	5.00e-71	261.00
IUUC-Ogl-077387	Oryza glaberrima	37.05	3.00e-73	269.00
IUUC-Ogu-078323	Oryza glumaepatula	38.38	4.00e-74	272.00
IUUC-Oin-079977	Oryza indica	33.33	1.00e-51	197.00
IUUC-Olo-080857	Oryza longistaminata	38.01	3.00e-74	272.00
IUUC-Ome-081568	Oryza meridionalis	37.94	8.00e-74	271.00
IUUC-Oni-082685	Oryza nivara	38.38	1.00e-77	283.00
IUUC-Opu-084049	Oryza punctata	37.86	4.00e-73	268.00
IUUC-Oru-084348	Oryza rufipogon	38.38	1.00e-77	283.00
IUUC-Osa-086076	Oryza sativa	38.38	1.00e-77	283.00
IUUC-Ola-086991	Oryzias latipes	74.26	0.00e+00	665.00
IUUC-Olu-087891	Ostreococcus lucimarinus	39.02	8.00e-72	264.00
IUUC-Oga-088991	Otolemur garnettii	68.13	6.00e-163	567.00
IUUC-Oar-090430	Ovis aries	69.05	3.00e-161	561.00
IUUC-Ptr-091359	Pan troglodytes	68.13	4.00e-159	554.00
IUUC-Pan-092499	Papio anubis	68.45	1.00e-157	550.00
IUUC-Pma-094447	Petromyzon marinus	58.79	5.00e-122	431.00
IUUC-Pno-095008	Phaeosphaeria nodorum	33.27	1.00e-64	241.00
IUUC-Ppa-095680	Physcomitrella patens	38.16	4.00e-79	288.00
IUUC-Pfo-096430	Poecilia formosa	76.37	0.00e+00	683.00
IUUC-Pab-097649	Pongo abelii	68.59	2.00e-159	555.00
IUUC-Pop-100037	Populus trichocarpa	40.53	2.00e-82	300.00
IUUC-Pca-100317	Procavia capensis	56.16	6.00e-94	338.00
IUUC-Ppe-101999	Prunus persica	40.76	3.00e-81	295.00
IUUC-Pva-103046	Pteropus vampyrus	68.96	2.00e-161	561.00
IUUC-Pgr-103655	Puccinia graminis	32.68	5.00e-58	219.00
IUUC-Ptt-103812	Puccinia triticina	36.18	5.00e-52	198.00
IUUC-Pte-104243	Pyrenophora teres	32.26	2.00e-59	223.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	32.26	5.00e-59	222.00
IUUC-Rno-104973	Rattus norvegicus	67.94	9.00e-158	550.00
IUUC-Sce-106329	Saccharomyces cerevisiae	27.09	3.00e-49	189.00
IUUC-Sha-106941	Sarcophilus harrisii	68.22	3.00e-155	541.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	35.17	7.00e-71	261.00
IUUC-Spo-108329	Schizosaccharomyces pombe	38.99	1.00e-79	290.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	31.94	5.00e-69	255.00
IUUC-Smo-109198	Selaginella moellendorffii	41.72	1.00e-67	250.00
IUUC-Sit-109694	Setaria italica	37.79	2.00e-76	280.00
IUUC-Sly-111294	Solanum lycopersicum	41.71	1.00e-85	310.00
IUUC-Stu-112747	Solanum tuberosum	42.23	4.00e-87	315.00
IUUC-Sar-113315	Sorex araneus	62.14	1.00e-48	187.00
IUUC-Sbi-114694	Sorghum bicolor	37.35	8.00e-77	281.00
IUUC-Sre-114937	Sporisorium reilianum	31.56	7.00e-69	255.00
IUUC-Ssc-116127	Sus scrofa	68.18	2.00e-158	551.00
IUUC-Tgu-117242	Taeniopygia guttata	65.87	1.00e-95	342.00
IUUC-Tru-118285	Takifugu rubripes	75.48	0.00e+00	684.00
IUUC-Tni-120368	Tetraodon nigroviridis	75.05	0.00e+00	661.00
IUUC-Tca-121724	Theobroma cacao	38.23	1.00e-77	284.00
IUUC-Tre-122106	Trichoderma reesei	35.47	4.00e-71	262.00
IUUC-Tvi-122526	Trichoderma virens	33.97	2.00e-69	257.00
IUUC-Tae-122939	Triticum aestivum	36.64	5.00e-73	268.00
IUUC-Tur-126548	Triticum urartu	36.39	7.00e-73	268.00
IUUC-Tme-126985	Tuber melanosporum	38.04	2.00e-75	276.00
IUUC-Tbe-127923	Tupaia belangeri	68.40	3.00e-157	548.00
IUUC-Ttr-129308	Tursiops truncatus	65.11	8.00e-146	510.00
IUUC-Uma-129472	Ustilago maydis	28.60	9.00e-62	231.00
IUUC-Vda-129910	Verticillium dahliae	34.92	4.00e-69	256.00
IUUC-Vvi-131683	Vitis vinifera	41.06	5.00e-91	328.00
IUUC-Xtr-132118	Xenopus tropicalis	64.81	2.00e-169	588.00
IUUC-Xma-133804	Xiphophorus maculatus	75.74	0.00e+00	674.00
IUUC-Yli-134639	Yarrowia lipolytica	33.57	8.00e-65	241.00
IUUC-Zma-135884	Zea mays	39.69	4.00e-77	282.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence