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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-104978
Ensembl Protein ID ENSRNOP00000075552.1
UniProt Accession A0A0G2KAW5; A0A0G2KAW5_RAT
Genbank Protein ID ENSRNOP00000075552
Protein Name WD repeat domain 48
Genbank Nucleotide ID AABR07071739
Gene Name Wdr48
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000016942.7 ENSRNOT00000024172.7 ENSRNOP00000024172.5
ENSRNOG00000016942.7 ENSRNOT00000082356.1 ENSRNOP00000075552.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.40e-32 110.7 223 260
UBD/Beta-Prp 1.50e-47 162.6 45 309
ULD/UDP/UFD/RAWUL 1.40e-23 83.6 583 687
ULD/UBL/SUMO 3.80e-60 201.0 574 680
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
    gHtd v +l + d t +sGs Dgti++W+l +++++
   Q: 223 GHTDNVKALLLhRDgTQCLSGSSDGTIRLWSLGQQRCI 260
    8********88*888*****************999997 PP
   


   UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghed 95
    + +++++ p + l+t++rd+ i++w+v + k ++s++ h++ v++v + +gk+l+++s+D t+kvw+ +g c++tl+ h+d
   Q: 45 RNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQdpyIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKD 133
    555677888889999*****************999999*************************************************** PP
   S: 96 svlslsfspsgdklvsGshdrtirvwdletgqclee........tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtlt 176
    +v +l++ ++++ ++s++ dr i +wd++t + l + lsg+++++ ++++++ g ++vsGs+ +++r+Wd +t l +l+
   Q: 134 YVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTAsnntvttsSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLK 222
    **********************************999*****999**********************************9999999999 PP
   S: 177 gghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
    g htd v+ l ++++g++++sgs dgt++lw+l +++c+ t++ h++ v+ +++ + ++++sg+ D+ i++ dlr+ d+ + ++
   Q: 223 G-HTDNVKALLLHRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEK 309
    9.************************************************************************99988876666666 PP
   


   ULD/UDP/UFD/RAWUL

   S: 4    sLeplesnkakddsklkkkylrcsarltVkhlkkflaeklkl........sssy....................evdllcedevLedne 64
    L+p++s++ak+ lkk++l++s++l+V++++++++ek+++ s +++llc+d+vL++n+
   Q: 583 YLQPHASSGAKT---LKKDRLSASDMLQVRKVMEHVYEKIINldnesqttS--SsnnekpeqekeediavlaeeKIELLCQDQVLDPNM 666
    69**********...*************************99988766653..0457999999999*********************** PP
   S: 65 tLeeikyifiwkkegpLvLqYr 86
    +L+++ ++fiwk++g+L+L+Yr
   Q: 667 DLRTV-KHFIWKSGGDLTLHYR 687
    *****.***************9 PP
   


   ULD/UBL/SUMO

   S: 1    eskffkapvslkvagqdGsevlfklklsa....qlkklmeavYvkrinldensvrfvfngqkireqetpeelevededkiellcq.... 81
    ++kf+k+p++l++++++G+++l+k++lsa q++k+me+vY+k+inld++s+++++ +++ eqe++e+++v++e+kiellcq
   Q: 574 MPKFNKIPFYLQPHASSGAKTLKKDRLSAsdmlQVRKVMEHVYEKIINLDNESQTTSSSNNEKPEQEKEEDIAVLAEEKIELLCQdqvl 662
    8********************************************************88888889********************7777 PP
   S: 82 ..............ksGG 85
    ksGG
   Q: 663 dpnmdlrtvkhfiwKSGG 680
    777777777777777776 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
MGLLPAHLPL LSAAFLRNSR DPAAEAARRP RVSYVIRDEV EKYNRNGVNA LQLDPALNRL 60
FTAGRDSIIR IWSVNQHKQD PYIASMEHHT DWVNDVVLCC NGKTLISASS DTTVKVWNAH 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-104978|E3,WD_repeat;UBD,Beta-Prp;ULD,RAWUL;ULD,SUMO|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGAGTGTCA ACATGCAAGA TGGCGGCCCA TCACCGGCAG AACACAGCCG GGCGGAGAAA 60
AGTGCAGGTA TGGCGGCCCG GCTCCGCGGC CTTGGCGACG CTGCCGTCCG GTCGGGGCTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-104978|E3,WD_repeat;UBD,Beta-Prp;ULD,RAWUL;ULD,SUMO|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR021772--DUF3337
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF11816--DUF3337
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0000724--P:double-strand break repair via homologous recombination
GO:0048568--P:embryonic organ development
GO:0048872--P:homeostasis of number of cells
GO:0035264--P:multicellular organism growth
GO:0050679--P:positive regulation of epithelial cell proliferation
GO:0016579--P:protein deubiquitination
GO:1902525--P:regulation of protein monoubiquitination
GO:0072520--P:seminiferous tubule development
GO:0007338--P:single fertilization
GO:0048705--P:skeletal system morphogenesis
GO:0043588--P:skin development
GO:0007283--P:spermatogenesis

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001160 Aegilops tauschii 39.62 3.00e-97 349.00
IUUC-Aml-001533 Ailuropoda melanoleuca 98.05 0.00e+00 1231.00
IUUC-Atr-003009 Amborella trichopoda 33.82 3.00e-108 386.00
IUUC-Apl-003709 Anas platyrhynchos 97.67 0.00e+00 662.00
IUUC-Aca-004875 Anolis carolinensis 96.54 0.00e+00 1253.00
IUUC-Aly-005464 Arabidopsis lyrata 40.08 4.00e-92 332.00
IUUC-Ath-006969 Arabidopsis thaliana 39.47 3.00e-88 319.00
IUUC-Acl-008203 Aspergillus clavatus 35.26 8.00e-48 186.00
IUUC-Afl-008571 Aspergillus flavus 35.03 4.00e-46 179.00
IUUC-Afu-009072 Aspergillus fumigatus 34.90 1.00e-45 178.00
IUUC-Ani-009413 Aspergillus nidulans 35.85 1.00e-47 184.00
IUUC-Ang-009571 Aspergillus niger 34.38 3.00e-44 174.00
IUUC-Aor-010064 Aspergillus oryzae 35.03 2.00e-46 181.00
IUUC-Ate-010463 Aspergillus terreus 34.60 2.00e-46 181.00
IUUC-Ame-010875 Astyanax mexicanus 93.74 0.00e+00 1084.00
IUUC-Bgr-012288 Blumeria graminis 34.22 6.00e-42 166.00
IUUC-Bta-013379 Bos taurus 98.35 0.00e+00 1234.00
IUUC-Bci-013859 Botrytis cinerea 32.47 2.00e-41 164.00
IUUC-Bdi-014645 Brachypodium distachyon 35.33 4.00e-112 399.00
IUUC-Bol-016450 Brassica oleracea 35.51 3.00e-99 356.00
IUUC-Bra-017253 Brassica rapa 34.21 3.00e-102 365.00
IUUC-Cel-018656 Caenorhabditis elegans 44.15 1.00e-155 543.00
IUUC-Cja-018804 Callithrix jacchus 98.05 0.00e+00 1231.00
IUUC-Cfa-020076 Canis familiaris 98.50 0.00e+00 1237.00
IUUC-Cpo-021721 Cavia porcellus 97.58 0.00e+00 1222.00
IUUC-Cre-022779 Chlamydomonas reinhardtii 30.66 5.00e-40 160.00
IUUC-Csa-023188 Chlorocebus sabaeus 98.50 0.00e+00 1237.00
IUUC-Cho-024932 Choloepus hoffmanni 97.29 0.00e+00 1240.00
IUUC-Cin-025591 Ciona intestinalis 56.24 0.00e+00 711.00
IUUC-Cgl-026540 Colletotrichum gloeosporioides 27.24 2.00e-20 95.10
IUUC-Cne-026819 Cryptococcus neoformans 35.53 4.00e-34 140.00
IUUC-Cme-027188 Cyanidioschyzon merolae 31.81 7.00e-71 261.00
IUUC-Dre-027926 Danio rerio 91.33 0.00e+00 1236.00
IUUC-Dno-029960 Dasypus novemcinctus 97.59 0.00e+00 1225.00
IUUC-Dor-030933 Dipodomys ordii 94.51 0.00e+00 709.00
IUUC-Dse-031532 Dothistroma septosporum 35.48 3.00e-46 180.00
IUUC-Dme-032168 Drosophila melanogaster 55.82 0.00e+00 678.00
IUUC-Ete-033107 Echinops telfairi 96.22 0.00e+00 1191.00
IUUC-Eca-034028 Equus caballus 98.35 0.00e+00 1235.00
IUUC-Eeu-034894 Erinaceus europaeus 96.61 0.00e+00 848.00
IUUC-Fca-035619 Felis catus 98.54 0.00e+00 920.00
IUUC-Fal-036869 Ficedula albicollis 96.98 0.00e+00 1249.00
IUUC-Fox-037907 Fusarium oxysporum 33.72 6.00e-42 166.00
IUUC-Fso-038101 Fusarium solani 33.71 1.00e-41 165.00
IUUC-Gmo-038627 Gadus morhua 93.27 0.00e+00 1250.00
IUUC-Ggr-039995 Gaeumannomyces graminis 31.75 3.00e-43 170.00
IUUC-Gga-040555 Gallus gallus 96.85 0.00e+00 1251.00
IUUC-Gac-042497 Gasterosteus aculeatus 92.97 0.00e+00 1219.00
IUUC-Gma-043089 Glycine max 34.46 7.00e-109 388.00
IUUC-Ggo-045561 Gorilla gorilla 98.50 0.00e+00 1237.00
IUUC-Hsa-045710 Homo sapiens 98.50 0.00e+00 1237.00
IUUC-Hvu-047730 Hordeum vulgare 35.82 1.00e-83 303.00
IUUC-Itr-049030 Ictidomys tridecemlineatus 98.73 0.00e+00 892.00
IUUC-Kpa-049237 Komagataella pastoris 30.77 6.00e-30 126.00
IUUC-Lch-049507 Latimeria chalumnae 93.87 0.00e+00 1226.00
IUUC-Lpe-051608 Leersia perrieri 35.04 6.00e-110 391.00
IUUC-Loc-052373 Lepisosteus oculatus 91.80 0.00e+00 1206.00
IUUC-Lma-053025 Leptosphaeria maculans 35.92 2.00e-49 191.00
IUUC-Laf-053706 Loxodonta africana 98.04 0.00e+00 1227.00
IUUC-Mcc-055046 Macaca mulatta 98.50 0.00e+00 1237.00
IUUC-Meu-056840 Macropus eugenii 79.22 9.00e-148 517.00
IUUC-Mor-057284 Magnaporthe oryzae 31.91 2.00e-43 171.00
IUUC-Mpo-057418 Magnaporthe poae 31.48 6.00e-42 166.00
IUUC-Mtr-058571 Medicago truncatula 34.32 6.00e-108 385.00
IUUC-Mla-059101 Melampsora laricipopulina 44.61 5.00e-45 177.00
IUUC-Mga-059297 Meleagris gallopavo 96.85 0.00e+00 1251.00
IUUC-Mvi-060419 Microbotryum violaceum 36.65 3.00e-38 154.00
IUUC-Mmr-061196 Microcebus murinus 92.01 0.00e+00 1138.00
IUUC-Mdo-062762 Monodelphis domestica 93.21 0.00e+00 1238.00
IUUC-Mmu-063915 Mus musculus 99.40 0.00e+00 1281.00
IUUC-Mac-065434 Musa acuminata 34.38 2.00e-106 380.00
IUUC-Mpu-065999 Mustela putorius furo 98.32 0.00e+00 814.00
IUUC-Mlu-068226 Myotis lucifugus 98.20 0.00e+00 1231.00
IUUC-Nfi-068416 Neosartorya fischeri 29.92 9.00e-57 215.00
IUUC-Ncr-068825 Neurospora crassa 31.70 9.00e-40 159.00
IUUC-Nle-069416 Nomascus leucogenys 98.50 0.00e+00 1237.00
IUUC-Opr-070515 Ochotona princeps 93.68 0.00e+00 1157.00
IUUC-Ont-072052 Oreochromis niloticus 90.79 0.00e+00 1160.00
IUUC-Oan-073636 Ornithorhynchus anatinus 93.96 0.00e+00 1240.00
IUUC-Ocu-074799 Oryctolagus cuniculus 98.35 0.00e+00 1233.00
IUUC-Oba-075146 Oryza barthii 35.07 3.00e-110 392.00
IUUC-Obr-076699 Oryza brachyantha 35.24 3.00e-111 395.00
IUUC-Ogl-077883 Oryza glaberrima 33.87 1.00e-67 250.00
IUUC-Ogu-078114 Oryza glumaepatula 35.07 1.00e-109 390.00
IUUC-Oin-079575 Oryza indica 35.42 1.00e-113 403.00
IUUC-Olo-080531 Oryza longistaminata 33.07 4.00e-100 359.00
IUUC-Ome-081368 Oryza meridionalis 40.81 2.00e-97 350.00
IUUC-Oni-082457 Oryza nivara 35.07 3.00e-110 392.00
IUUC-Opu-084050 Oryza punctata 34.94 4.00e-109 389.00
IUUC-Oru-084330 Oryza rufipogon 35.07 4.00e-110 392.00
IUUC-Osa-085408 Oryza sativa 35.42 1.00e-113 403.00
IUUC-Ola-087546 Oryzias latipes 92.60 0.00e+00 1221.00
IUUC-Olu-087710 Ostreococcus lucimarinus 31.36 1.00e-80 294.00
IUUC-Oga-087998 Otolemur garnettii 97.62 0.00e+00 1234.00
IUUC-Oar-090303 Ovis aries 98.35 0.00e+00 1234.00
IUUC-Ptr-090588 Pan troglodytes 98.50 0.00e+00 1237.00
IUUC-Pan-092722 Papio anubis 98.50 0.00e+00 1237.00
IUUC-Psi-093911 Pelodiscus sinensis 95.99 0.00e+00 1254.00
IUUC-Pma-094580 Petromyzon marinus 87.41 0.00e+00 1152.00
IUUC-Pno-095085 Phaeosphaeria nodorum 34.71 2.00e-43 171.00
IUUC-Ppa-095594 Physcomitrella patens 36.02 6.00e-113 401.00
IUUC-Pfo-096994 Poecilia formosa 92.73 0.00e+00 1216.00
IUUC-Pab-097586 Pongo abelii 98.35 0.00e+00 1234.00
IUUC-Pop-099740 Populus trichocarpa 34.64 1.00e-102 367.00
IUUC-Pca-100458 Procavia capensis 97.60 7.00e-106 378.00
IUUC-Ppe-102060 Prunus persica 34.31 1.00e-105 377.00
IUUC-Pva-102698 Pteropus vampyrus 93.68 0.00e+00 1216.00
IUUC-Pgr-103649 Puccinia graminis 34.12 1.00e-47 185.00
IUUC-Ptt-103910 Puccinia triticina 43.90 7.00e-53 202.00
IUUC-Pte-104181 Pyrenophora teres 36.14 2.00e-48 188.00
IUUC-Pyt-104439 Pyrenophora triticirepentis 36.14 4.00e-48 187.00
IUUC-Sha-107079 Sarcophilus harrisii 95.92 0.00e+00 1184.00
IUUC-Sja-107716 Schizosaccharomyces japonicus 29.86 7.00e-59 222.00
IUUC-Spo-108325 Schizosaccharomyces pombe 30.59 4.00e-51 196.00
IUUC-Ssl-108542 Sclerotinia sclerotiorum 29.25 2.00e-45 178.00
IUUC-Smo-109427 Selaginella moellendorffii 34.62 2.00e-109 390.00
IUUC-Sit-110755 Setaria italica 36.71 1.00e-114 407.00
IUUC-Sly-111099 Solanum lycopersicum 35.31 4.00e-98 352.00
IUUC-Sar-113408 Sorex araneus 98.42 0.00e+00 738.00
IUUC-Sbi-113789 Sorghum bicolor 35.27 2.00e-111 396.00
IUUC-Sre-114998 Sporisorium reilianum 39.60 1.00e-51 199.00
IUUC-Ssc-115434 Sus scrofa 98.50 0.00e+00 1237.00
IUUC-Tgu-116517 Taeniopygia guttata 96.84 0.00e+00 1255.00
IUUC-Tru-118174 Takifugu rubripes 93.15 0.00e+00 1225.00
IUUC-Tsy-118935 Tarsius syrichta 98.20 0.00e+00 1257.00
IUUC-Tni-119744 Tetraodon nigroviridis 93.57 0.00e+00 1196.00
IUUC-Tca-121360 Theobroma cacao 34.24 4.00e-110 392.00
IUUC-Tre-122198 Trichoderma reesei 32.95 1.00e-43 171.00
IUUC-Tvi-122389 Trichoderma virens 32.95 1.00e-43 171.00
IUUC-Tae-125576 Triticum aestivum 35.45 5.00e-112 398.00
IUUC-Tur-126699 Triticum urartu 35.17 1.00e-110 394.00
IUUC-Tme-126932 Tuber melanosporum 31.74 4.00e-55 210.00
IUUC-Tbe-127267 Tupaia belangeri 98.60 0.00e+00 691.00
IUUC-Ttr-129153 Tursiops truncatus 97.89 0.00e+00 1261.00
IUUC-Uma-129604 Ustilago maydis 42.06 1.00e-49 192.00
IUUC-Vda-129925 Verticillium dahliae 35.16 2.00e-46 181.00
IUUC-Vpa-130553 Vicugna pacos 97.47 0.00e+00 946.00
IUUC-Vvi-130995 Vitis vinifera 34.49 6.00e-105 375.00
IUUC-Xtr-132346 Xenopus tropicalis 92.64 0.00e+00 1192.00
IUUC-Xma-134266 Xiphophorus maculatus 91.86 0.00e+00 662.00
IUUC-Yli-134451 Yarrowia lipolytica 27.98 5.00e-39 156.00
IUUC-Zma-135647 Zea mays 35.55 3.00e-113 402.00
Created Date 25-Jun-2017

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