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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006844
UUCD1 version UUC-ArT-00802
Ensembl Protein ID AT5G58410.2
UniProt Accession Q9FGI1; LTN1_ARATH
Genbank Protein ID BAB10256.1; BAB10256.1; AED97049.1
Protein Name E3 ubiquitin-protein ligase listerin; RING-type E3 ubiquitin transferase listerin
Genbank Nucleotide ID AB025632; AB019228; CP002688
Gene Name At5g58410; MCK7.28
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G58410 AT5G58410.2 AT5G58410.2
AT5G58410 AT5G58410.1 AT5G58410.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 41.79 1.00e-45 184.00 IUUC-Hsa-047016
E3 activity/RING/RING 42.29 5.00e-46 185.00 IUUC-Mmu-064389
E3 activity/RING/RING 37.97 2.00e-40 163.00 IUUC-Sce-106305
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     E3 ubiquitin-protein ligase. Component of the ribosome quality control complex (RQC), a ribosome-associated complex that mediates ubiquitination and extraction of incompletely synthesized nascent chains for proteasomal degradation. Ubiquitination leads to CDC48 recruitment for extraction and degradation of the incomplete translation product.
 E3 ubiquitin-protein ligase. Component of the ribosome quality control complex (RQC), a ribosome-associated complex that mediates ubiquitination and extraction of incompletely synthesized nascent chains for proteasomal degradation. Ubiquitination leads to CDC48 recruitment for extraction and degradation of the incomplete translation product.
Protein Sequence
(Fasta)
MGKPKGDAAR SKARPSSSSL AASLLPSGSA AAVGFGGYVG SSRFQTSLSN EDSASFLDLD 60
SEVAQHLQRL SRKDPTTKIK ALASLSELVK QKQGKELLPI IPQWTFEYKK LILDYSRDVR 120
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Protein Fasta Sequence


>IUUC-Ath-006844|E3,RING|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GTCTGATAAG GAACAAACTA AAATATAGAG GAACTTTTGT GAATATTTAT AAACGCGACC 60
TTCCTCTTAG TTGGGCCATA AATAATTGGG CCTAAATTAA GCAAATCCAA TACTAATGGC 120
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Nucleotide Fasta Sequence


>IUUC-Ath-006844|E3,RING|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50089--ZF_RING_2
Pfam

PF13639--zf-RING_2
SMART

SM00744--RINGv
Gene Ontology

GO:0005829--C:cytosol
GO:0016740--F:transferase activity
GO:0008270--F:zinc ion binding
GO:0016567--P:protein ubiquitination
KEGG ath:AT5G58410
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000717 Aegilops tauschii 40.49 0.00e+00 1255.00
IUUC-Aml-002311 Ailuropoda melanoleuca 41.18 3.00e-47 184.00
IUUC-Atr-002905 Amborella trichopoda 43.18 0.00e+00 1362.00
IUUC-Apl-003323 Anas platyrhynchos 42.65 3.00e-47 184.00
IUUC-Aca-004616 Anolis carolinensis 41.06 3.00e-48 187.00
IUUC-Aly-006145 Arabidopsis lyrata 93.11 0.00e+00 3351.00
IUUC-Ago-007750 Ashbya gossypii 34.55 3.00e-37 150.00
IUUC-Acl-008369 Aspergillus clavatus 32.20 8.00e-28 119.00
IUUC-Afl-008540 Aspergillus flavus 32.20 7.00e-29 123.00
IUUC-Afu-009089 Aspergillus fumigatus 32.68 1.00e-28 122.00
IUUC-Ani-009292 Aspergillus nidulans 31.22 6.00e-28 119.00
IUUC-Ang-009715 Aspergillus niger 32.20 2.00e-21 97.80
IUUC-Aor-009887 Aspergillus oryzae 32.20 5.00e-29 123.00
IUUC-Ate-010308 Aspergillus terreus 29.89 2.00e-19 91.30
IUUC-Ame-011345 Astyanax mexicanus 42.44 1.00e-48 189.00
IUUC-Bgr-012196 Blumeria graminis 25.12 9.00e-11 62.80
IUUC-Bta-012535 Bos taurus 40.69 4.00e-44 174.00
IUUC-Bci-013630 Botrytis cinerea 31.37 5.00e-31 130.00
IUUC-Bdi-014142 Brachypodium distachyon 40.63 0.00e+00 1306.00
IUUC-Bol-015333 Brassica oleracea 83.87 0.00e+00 3022.00
IUUC-Cel-018254 Caenorhabditis elegans 39.38 4.00e-38 153.00
IUUC-Cja-019469 Callithrix jacchus 41.18 2.00e-47 184.00
IUUC-Cfa-020640 Canis familiaris 40.98 4.00e-46 180.00
IUUC-Cpo-021322 Cavia porcellus 41.67 1.00e-47 185.00
IUUC-Cre-022677 Chlamydomonas reinhardtii 43.69 1.00e-39 157.00
IUUC-Csa-024234 Chlorocebus sabaeus 41.18 2.00e-47 184.00
IUUC-Cho-024709 Choloepus hoffmanni 41.79 5.00e-46 180.00
IUUC-Csv-026100 Ciona savignyi 35.29 3.00e-39 157.00
IUUC-Cgl-026598 Colletotrichum gloeosporioides 41.89 8.00e-17 77.40
IUUC-Cne-026789 Cryptococcus neoformans 35.35 2.00e-33 138.00
IUUC-Cme-027135 Cyanidioschyzon merolae 24.34 2.00e-15 79.00
IUUC-Dre-027405 Danio rerio 41.95 4.00e-49 190.00
IUUC-Dno-029874 Dasypus novemcinctus 36.02 2.00e-29 124.00
IUUC-Dor-030589 Dipodomys ordii 35.00 3.00e-45 177.00
IUUC-Dse-031427 Dothistroma septosporum 35.44 1.00e-35 145.00
IUUC-Dme-031827 Drosophila melanogaster 41.29 2.00e-36 148.00
IUUC-Ete-032459 Echinops telfairi 34.53 3.00e-49 191.00
IUUC-Eca-033218 Equus caballus 41.18 3.00e-47 184.00
IUUC-Eeu-035299 Erinaceus europaeus 27.82 5.00e-15 77.00
IUUC-Fca-036081 Felis catus 40.69 8.00e-47 182.00
IUUC-Fal-037561 Ficedula albicollis 41.55 1.00e-46 182.00
IUUC-Fox-037930 Fusarium oxysporum 29.49 3.00e-34 140.00
IUUC-Fso-038413 Fusarium solani 31.34 1.00e-32 135.00
IUUC-Gmo-039359 Gadus morhua 42.44 2.00e-49 191.00
IUUC-Ggr-039744 Gaeumannomyces graminis 31.22 2.00e-32 134.00
IUUC-Gga-041175 Gallus gallus 41.71 1.00e-46 182.00
IUUC-Gac-041943 Gasterosteus aculeatus 41.46 2.00e-48 187.00
IUUC-Gma-043888 Glycine max 50.95 0.00e+00 1616.00
IUUC-Ggo-044912 Gorilla gorilla 30.00 4.00e-34 139.00
IUUC-Hsa-047016 Homo sapiens 41.18 4.00e-47 184.00
IUUC-Hvu-047059 Hordeum vulgare 39.63 0.00e+00 1189.00
IUUC-Itr-048789 Ictidomys tridecemlineatus 41.18 1.00e-47 184.00
IUUC-Kpa-049133 Komagataella pastoris 36.32 7.00e-40 159.00
IUUC-Lch-049879 Latimeria chalumnae 35.05 1.00e-31 132.00
IUUC-Lpe-051455 Leersia perrieri 39.04 0.00e+00 1232.00
IUUC-Loc-052799 Lepisosteus oculatus 35.53 1.00e-49 192.00
IUUC-Lma-052972 Leptosphaeria maculans 32.20 4.00e-32 133.00
IUUC-Laf-053479 Loxodonta africana 41.95 6.00e-48 186.00
IUUC-Mcc-055120 Macaca mulatta 41.18 2.00e-47 184.00
IUUC-Meu-055932 Macropus eugenii 40.58 4.00e-48 186.00
IUUC-Mor-057209 Magnaporthe oryzae 33.98 2.00e-33 137.00
IUUC-Mpo-057581 Magnaporthe poae 29.76 9.00e-27 115.00
IUUC-Mtr-058499 Medicago truncatula 50.59 0.00e+00 1627.00
IUUC-Mla-059169 Melampsora laricipopulina 44.70 3.00e-34 136.00
IUUC-Mga-059800 Meleagris gallopavo 41.06 1.00e-46 182.00
IUUC-Mvi-060350 Microbotryum violaceum 37.28 6.00e-45 176.00
IUUC-Mmr-061548 Microcebus murinus 41.79 2.00e-47 184.00
IUUC-Mdo-062405 Monodelphis domestica 34.22 2.00e-49 191.00
IUUC-Mmu-064389 Mus musculus 42.29 1.00e-47 185.00
IUUC-Mac-064596 Musa acuminata 39.41 0.00e+00 1214.00
IUUC-Mpu-065687 Mustela putorius furo 41.18 3.00e-47 184.00
IUUC-Mlu-067591 Myotis lucifugus 39.71 6.00e-46 179.00
IUUC-Nfi-068298 Neosartorya fischeri 33.17 1.00e-28 122.00
IUUC-Ncr-068876 Neurospora crassa 31.07 6.00e-33 136.00
IUUC-Nle-069799 Nomascus leucogenys 41.79 2.00e-47 184.00
IUUC-Opr-071155 Ochotona princeps 35.67 4.00e-48 187.00
IUUC-Ont-071290 Oreochromis niloticus 37.09 3.00e-52 201.00
IUUC-Ocu-074947 Oryctolagus cuniculus 41.18 2.00e-47 184.00
IUUC-Oba-075986 Oryza barthii 35.75 0.00e+00 827.00
IUUC-Obr-076304 Oryza brachyantha 40.65 0.00e+00 1274.00
IUUC-Ogl-077600 Oryza glaberrima 40.86 0.00e+00 1286.00
IUUC-Ogu-078079 Oryza glumaepatula 36.47 0.00e+00 854.00
IUUC-Oin-079935 Oryza indica 34.72 0.00e+00 709.00
IUUC-Olo-080897 Oryza longistaminata 37.09 0.00e+00 1041.00
IUUC-Ome-081777 Oryza meridionalis 39.21 0.00e+00 1197.00
IUUC-Oni-082298 Oryza nivara 36.22 0.00e+00 852.00
IUUC-Opu-083156 Oryza punctata 39.71 0.00e+00 1225.00
IUUC-Oru-085243 Oryza rufipogon 35.56 0.00e+00 847.00
IUUC-Osa-086219 Oryza sativa 40.80 0.00e+00 1284.00
IUUC-Ola-087202 Oryzias latipes 42.44 7.00e-51 196.00
IUUC-Olu-087800 Ostreococcus lucimarinus 31.08 2.00e-57 218.00
IUUC-Oga-088962 Otolemur garnettii 41.79 2.00e-47 184.00
IUUC-Oar-089858 Ovis aries 40.69 8.00e-47 182.00
IUUC-Ptr-090958 Pan troglodytes 41.18 2.00e-47 184.00
IUUC-Pan-092712 Papio anubis 41.18 2.00e-47 184.00
IUUC-Psi-093557 Pelodiscus sinensis 34.11 7.00e-50 192.00
IUUC-Pma-094131 Petromyzon marinus 28.78 3.00e-39 155.00
IUUC-Pno-094947 Phaeosphaeria nodorum 32.67 6.00e-31 129.00
IUUC-Ppa-095258 Physcomitrella patens 32.39 1.00e-120 427.00
IUUC-Pfo-097035 Poecilia formosa 43.41 7.00e-51 196.00
IUUC-Pab-097897 Pongo abelii 41.18 2.00e-47 184.00
IUUC-Pop-099487 Populus trichocarpa 51.16 0.00e+00 1686.00
IUUC-Pca-100688 Procavia capensis 50.00 6.00e-38 153.00
IUUC-Ppe-101821 Prunus persica 51.00 0.00e+00 1586.00
IUUC-Pva-102632 Pteropus vampyrus 41.18 9.00e-47 182.00
IUUC-Pgr-103311 Puccinia graminis 42.23 1.00e-48 188.00
IUUC-Ptt-103825 Puccinia triticina 36.15 7.00e-42 166.00
IUUC-Pte-104036 Pyrenophora teres 33.33 1.00e-31 132.00
IUUC-Pyt-104460 Pyrenophora triticirepentis 33.33 6.00e-32 133.00
IUUC-Rno-104852 Rattus norvegicus 41.29 5.00e-47 183.00
IUUC-Sce-106305 Saccharomyces cerevisiae 37.97 4.00e-41 163.00
IUUC-Sja-107896 Schizosaccharomyces japonicus 33.65 7.00e-37 149.00
IUUC-Spo-108267 Schizosaccharomyces pombe 36.62 5.00e-40 160.00
IUUC-Smo-109180 Selaginella moellendorffii 34.70 2.00e-135 477.00
IUUC-Sit-110615 Setaria italica 41.07 0.00e+00 1325.00
IUUC-Sly-111861 Solanum lycopersicum 49.08 0.00e+00 1542.00
IUUC-Stu-112373 Solanum tuberosum 49.55 0.00e+00 920.00
IUUC-Sar-113666 Sorex araneus 40.69 5.00e-47 183.00
IUUC-Sbi-114597 Sorghum bicolor 39.92 0.00e+00 1279.00
IUUC-Sre-114965 Sporisorium reilianum 39.32 8.00e-45 176.00
IUUC-Ssc-115866 Sus scrofa 41.18 3.00e-47 184.00
IUUC-Tgu-117521 Taeniopygia guttata 41.55 1.00e-46 182.00
IUUC-Tru-117803 Takifugu rubripes 43.90 1.00e-51 198.00
IUUC-Tsy-119135 Tarsius syrichta 40.72 9.00e-44 172.00
IUUC-Tni-119807 Tetraodon nigroviridis 44.39 5.00e-50 193.00
IUUC-Tca-121036 Theobroma cacao 52.97 0.00e+00 1746.00
IUUC-Tre-121942 Trichoderma reesei 31.07 9.00e-32 132.00
IUUC-Tvi-122453 Trichoderma virens 31.07 5.00e-32 133.00
IUUC-Tae-123061 Triticum aestivum 40.10 0.00e+00 1257.00
IUUC-Tur-126021 Triticum urartu 42.22 3.00e-173 602.00
IUUC-Tme-126889 Tuber melanosporum 35.44 1.00e-33 139.00
IUUC-Tbe-127297 Tupaia belangeri 37.86 7.00e-32 132.00
IUUC-Ttr-128745 Tursiops truncatus 41.18 2.00e-47 184.00
IUUC-Uma-129552 Ustilago maydis 39.81 6.00e-46 179.00
IUUC-Vda-129838 Verticillium dahliae 33.50 4.00e-35 143.00
IUUC-Vpa-130567 Vicugna pacos 41.18 3.00e-47 184.00
IUUC-Vvi-131418 Vitis vinifera 50.84 0.00e+00 1023.00
IUUC-Xtr-132926 Xenopus tropicalis 35.22 8.00e-46 179.00
IUUC-Xma-134278 Xiphophorus maculatus 43.41 8.00e-51 196.00
IUUC-Yli-134476 Yarrowia lipolytica 39.44 8.00e-42 165.00
IUUC-Zma-135611 Zea mays 39.79 0.00e+00 1290.00
Created Date 25-Jun-2017

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