iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tme-127080

Ensembl Protein ID

CAZ84737

UniProt Accession

D5GJP4; D5GJP4_TUBMM

Genbank Protein ID

CAZ84737.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

FN430332

Gene Name

ERB1; GSTUM_00009101001

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GSTUM_00009101001	CAZ84737	CAZ84737

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-17	60.1	294	330

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+++v+ l   ++   l++G+dDgt+++W++ tg+ 
   Q: 294  GHEGKVRTLGIdPSgVWLATGGDDGTVRIWEVLTGRE 330
           8*******988966699***************99975 PP

Organism

Tuber melanosporum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MYPEIDPVYD SDDTDVEEAN TIGNIPLEFY DEYPHIGYDI NGKKLMRPAK GAALDALLDS 60
IEVPKGWTGM TDRNTGGDLM LTQEELEMVR KIQMGEVPVD GYDPYAPMVE YFTSKTEVMP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGATGGGACG CTTTCGCAGA GTGAGGATGA TGAGGATTCT AGCGACGACG ACGAATAAGA 60
TGGGCAAGAT GAGGACGAAG ATGAGGAGGA GGAACTTGAC AGCGATGAGG TCCCTTCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

tml:GSTUM_00009101001

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	41.47	2.00e-121	428.00
IUUC-Aml-001507	Ailuropoda melanoleuca	44.62	1.00e-149	521.00
IUUC-Atr-003141	Amborella trichopoda	41.67	3.00e-84	303.00
IUUC-Apl-003545	Anas platyrhynchos	44.73	4.00e-139	486.00
IUUC-Aly-005649	Arabidopsis lyrata	45.68	4.00e-155	540.00
IUUC-Ath-007625	Arabidopsis thaliana	46.00	4.00e-148	516.00
IUUC-Ago-007958	Ashbya gossypii	60.54	0.00e+00	842.00
IUUC-Acl-008344	Aspergillus clavatus	65.41	0.00e+00	825.00
IUUC-Afl-008616	Aspergillus flavus	65.26	0.00e+00	848.00
IUUC-Afu-009083	Aspergillus fumigatus	65.71	0.00e+00	808.00
IUUC-Ani-009365	Aspergillus nidulans	63.75	0.00e+00	837.00
IUUC-Ang-009796	Aspergillus niger	63.75	0.00e+00	817.00
IUUC-Aor-010015	Aspergillus oryzae	65.26	0.00e+00	848.00
IUUC-Ate-010537	Aspergillus terreus	64.60	0.00e+00	852.00
IUUC-Ame-011767	Astyanax mexicanus	55.42	1.00e-76	277.00
IUUC-Bgr-012286	Blumeria graminis	67.70	0.00e+00	887.00
IUUC-Bta-013569	Bos taurus	46.71	1.00e-159	554.00
IUUC-Bci-013820	Botrytis cinerea	66.56	0.00e+00	845.00
IUUC-Bdi-014477	Brachypodium distachyon	44.53	2.00e-149	520.00
IUUC-Bol-016099	Brassica oleracea	44.67	4.00e-152	530.00
IUUC-Bra-017174	Brassica rapa	44.67	5.00e-153	533.00
IUUC-Cel-018201	Caenorhabditis elegans	41.16	2.00e-128	451.00
IUUC-Cja-019009	Callithrix jacchus	44.99	7.00e-97	346.00
IUUC-Cfa-020173	Canis familiaris	44.09	7.00e-149	518.00
IUUC-Cpo-021796	Cavia porcellus	46.55	3.00e-158	550.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	44.96	1.00e-142	498.00
IUUC-Csa-023440	Chlorocebus sabaeus	47.51	5.00e-167	579.00
IUUC-Cin-025782	Ciona intestinalis	45.45	9.00e-164	568.00
IUUC-Csv-026352	Ciona savignyi	44.06	5.00e-160	555.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	56.26	0.00e+00	672.00
IUUC-Cne-027004	Cryptococcus neoformans	53.41	0.00e+00	702.00
IUUC-Cme-027242	Cyanidioschyzon merolae	38.19	5.00e-125	439.00
IUUC-Dre-028658	Danio rerio	47.80	1.00e-174	604.00
IUUC-Dno-028883	Dasypus novemcinctus	47.51	6.00e-163	565.00
IUUC-Dor-031031	Dipodomys ordii	45.98	2.00e-164	570.00
IUUC-Dse-031443	Dothistroma septosporum	59.85	0.00e+00	780.00
IUUC-Dme-031786	Drosophila melanogaster	46.03	3.00e-164	570.00
IUUC-Eca-033677	Equus caballus	47.51	2.00e-161	560.00
IUUC-Eeu-035310	Erinaceus europaeus	43.17	1.00e-124	437.00
IUUC-Fca-035888	Felis catus	46.49	8.00e-163	565.00
IUUC-Fal-037438	Ficedula albicollis	47.03	1.00e-136	478.00
IUUC-Fox-037973	Fusarium oxysporum	62.77	0.00e+00	854.00
IUUC-Fso-038187	Fusarium solani	64.00	0.00e+00	858.00
IUUC-Gmo-039114	Gadus morhua	45.28	6.00e-155	538.00
IUUC-Ggr-039746	Gaeumannomyces graminis	63.40	0.00e+00	857.00
IUUC-Gga-040631	Gallus gallus	48.14	1.00e-93	334.00
IUUC-Gac-042582	Gasterosteus aculeatus	46.31	4.00e-163	566.00
IUUC-Gma-044215	Glycine max	46.43	7.00e-154	535.00
IUUC-Ggo-045587	Gorilla gorilla	47.35	6.00e-167	578.00
IUUC-Hsa-046319	Homo sapiens	47.51	5.00e-168	582.00
IUUC-Hvu-047526	Hordeum vulgare	44.46	1.00e-142	498.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	46.65	4.00e-161	560.00
IUUC-Kpa-049221	Komagataella pastoris	55.11	0.00e+00	762.00
IUUC-Lch-049640	Latimeria chalumnae	47.79	8.00e-180	621.00
IUUC-Lpe-051135	Leersia perrieri	41.44	4.00e-126	443.00
IUUC-Loc-051930	Lepisosteus oculatus	48.96	2.00e-180	623.00
IUUC-Lma-053290	Leptosphaeria maculans	65.02	0.00e+00	837.00
IUUC-Laf-053903	Loxodonta africana	42.56	2.00e-137	481.00
IUUC-Mcc-055471	Macaca mulatta	47.35	4.00e-167	579.00
IUUC-Meu-056190	Macropus eugenii	46.23	7.00e-161	558.00
IUUC-Mor-057135	Magnaporthe oryzae	63.94	0.00e+00	829.00
IUUC-Mpo-057475	Magnaporthe poae	62.94	0.00e+00	811.00
IUUC-Mtr-058689	Medicago truncatula	42.28	2.00e-137	481.00
IUUC-Mla-059149	Melampsora laricipopulina	54.71	0.00e+00	704.00
IUUC-Mga-059645	Meleagris gallopavo	43.25	3.00e-55	206.00
IUUC-Mvi-060485	Microbotryum violaceum	50.15	1.00e-172	599.00
IUUC-Mmr-061674	Microcebus murinus	46.33	1.00e-159	555.00
IUUC-Mdo-062973	Monodelphis domestica	46.07	4.00e-167	579.00
IUUC-Mmu-064180	Mus musculus	46.49	8.00e-161	558.00
IUUC-Mac-064535	Musa acuminata	42.36	6.00e-94	336.00
IUUC-Mpu-066406	Mustela putorius furo	47.03	2.00e-166	577.00
IUUC-Mlu-067795	Myotis lucifugus	47.51	4.00e-155	540.00
IUUC-Nfi-068516	Neosartorya fischeri	65.26	0.00e+00	774.00
IUUC-Ncr-068767	Neurospora crassa	63.30	0.00e+00	803.00
IUUC-Opr-071084	Ochotona princeps	44.13	9.00e-66	241.00
IUUC-Ont-071614	Oreochromis niloticus	47.12	1.00e-173	601.00
IUUC-Oba-075980	Oryza barthii	41.28	7.00e-125	439.00
IUUC-Obr-076799	Oryza brachyantha	44.23	4.00e-144	503.00
IUUC-Ogl-077134	Oryza glaberrima	44.16	1.00e-138	485.00
IUUC-Ogu-078655	Oryza glumaepatula	41.60	7.00e-130	455.00
IUUC-Oin-079654	Oryza indica	44.16	2.00e-138	484.00
IUUC-Olo-080706	Oryza longistaminata	41.92	1.00e-126	445.00
IUUC-Ome-081716	Oryza meridionalis	41.41	2.00e-76	278.00
IUUC-Oni-082508	Oryza nivara	41.28	7.00e-127	445.00
IUUC-Opu-083707	Oryza punctata	41.83	1.00e-125	441.00
IUUC-Oru-084453	Oryza rufipogon	41.92	1.00e-126	445.00
IUUC-Osa-085811	Oryza sativa	44.00	2.00e-138	484.00
IUUC-Ola-087361	Oryzias latipes	47.40	3.00e-173	600.00
IUUC-Oga-088015	Otolemur garnettii	46.07	4.00e-167	579.00
IUUC-Oar-090058	Ovis aries	57.14	1.00e-53	202.00
IUUC-Ptr-090631	Pan troglodytes	45.38	2.00e-65	240.00
IUUC-Pan-092306	Papio anubis	47.44	3.00e-166	576.00
IUUC-Pma-094622	Petromyzon marinus	47.92	3.00e-175	606.00
IUUC-Pno-094794	Phaeosphaeria nodorum	60.03	0.00e+00	793.00
IUUC-Ppa-095528	Physcomitrella patens	40.82	6.00e-90	323.00
IUUC-Pfo-096682	Poecilia formosa	46.86	8.00e-178	615.00
IUUC-Pab-097939	Pongo abelii	47.72	2.00e-151	527.00
IUUC-Pop-099043	Populus trichocarpa	47.64	2.00e-142	497.00
IUUC-Pca-100333	Procavia capensis	45.21	5.00e-157	546.00
IUUC-Ppe-102078	Prunus persica	45.76	2.00e-145	507.00
IUUC-Pgr-103525	Puccinia graminis	52.70	0.00e+00	655.00
IUUC-Ptt-103929	Puccinia triticina	52.76	0.00e+00	637.00
IUUC-Pte-104029	Pyrenophora teres	64.71	0.00e+00	884.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	64.41	0.00e+00	881.00
IUUC-Rno-105248	Rattus norvegicus	46.55	8.00e-161	558.00
IUUC-Sce-106381	Saccharomyces cerevisiae	57.76	0.00e+00	810.00
IUUC-Sha-106519	Sarcophilus harrisii	46.33	5.00e-166	575.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	51.97	0.00e+00	642.00
IUUC-Spo-108071	Schizosaccharomyces pombe	49.40	4.00e-178	616.00
IUUC-Smo-109604	Selaginella moellendorffii	45.89	1.00e-142	498.00
IUUC-Sit-110551	Setaria italica	44.55	2.00e-141	494.00
IUUC-Sly-110970	Solanum lycopersicum	46.04	5.00e-81	293.00
IUUC-Stu-112593	Solanum tuberosum	44.68	5.00e-149	519.00
IUUC-Sar-113123	Sorex araneus	44.79	2.00e-68	250.00
IUUC-Sbi-113945	Sorghum bicolor	43.59	6.00e-143	499.00
IUUC-Sre-115188	Sporisorium reilianum	49.85	0.00e+00	629.00
IUUC-Ssc-115352	Sus scrofa	47.03	2.00e-165	574.00
IUUC-Tru-117685	Takifugu rubripes	47.71	2.00e-178	617.00
IUUC-Tni-119982	Tetraodon nigroviridis	47.52	6.00e-171	592.00
IUUC-Tca-121664	Theobroma cacao	45.64	2.00e-153	533.00
IUUC-Tre-122229	Trichoderma reesei	61.19	0.00e+00	753.00
IUUC-Tvi-122576	Trichoderma virens	63.13	0.00e+00	771.00
IUUC-Tae-124110	Triticum aestivum	44.69	5.00e-137	479.00
IUUC-Tur-126781	Triticum urartu	40.80	5.00e-117	413.00
IUUC-Ttr-128514	Tursiops truncatus	42.08	1.00e-100	358.00
IUUC-Uma-129556	Ustilago maydis	49.56	3.00e-177	613.00
IUUC-Vda-129715	Verticillium dahliae	64.15	0.00e+00	837.00
IUUC-Vvi-131211	Vitis vinifera	42.90	7.00e-136	475.00
IUUC-Xma-133883	Xiphophorus maculatus	46.77	7.00e-173	598.00
IUUC-Yli-134438	Yarrowia lipolytica	59.67	0.00e+00	795.00
IUUC-Zma-135341	Zea mays	38.42	1.00e-127	448.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence