iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116374

Ensembl Protein ID

ENSSSCP00000011080.2

UniProt Accession

F1SDX0; F1SDX0_PIG

Genbank Protein ID

ENSSSCP00000011080

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CT990602

Gene Name

ERCC6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000010391.2	ENSSSCT00000011375.2	ENSSSCP00000011080.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/CUE	83.50	0.00e+00	2423.00	IUUC-Hsa-046895
UBD/Alpha-Helix/UBA	83.50	0.00e+00	2423.00	IUUC-Hsa-046895

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MPNEGIPHSS RTQEQDCLQS QDVSESEEAT IKQENGVGVE LGESLLSSSA DGPSCSAEGY 60
PAEVPRRGPA LLHIDRHQIQ AVEPSAQALE LQGLGVDVYD QDVLEQGVLR QVDSAIQEAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTAGATAGCC TTCCGAAGAT GCCAAATGAA GGAATCCCCC ACTCAAGTCG AACTCAGGAG 60
CAAGACTGTT TACAGAGTCA GGATGTCAGT GAGAGTGAAG AAGCGACAAT CAAGCAGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER

Pfam

PF00271--Helicase_C
PF00176--SNF2_N

SMART

SM00487--DEXDc
SM00490--HELICc

Gene Ontology

GO:0005829--C:cytosol
GO:0005794--C:Golgi apparatus
GO:0005730--C:nucleolus
GO:0008023--C:transcription elongation factor complex
GO:0005524--F:ATP binding
GO:0003682--F:chromatin binding
GO:0003677--F:DNA binding
GO:0008094--F:DNA-dependent ATPase activity
GO:0030296--F:protein tyrosine kinase activator activity
GO:0007256--P:activation of JNKK activity
GO:0007257--P:activation of JUN kinase activity
GO:0006284--P:base-excision repair
GO:0008630--P:intrinsic apoptotic signaling pathway in response to DNA damage
GO:0035264--P:multicellular organism growth
GO:0045494--P:photoreceptor cell maintenance
GO:0032786--P:positive regulation of DNA-templated transcription, elongation
GO:0006290--P:pyrimidine dimer repair
GO:0010332--P:response to gamma radiation
GO:0000303--P:response to superoxide
GO:0009636--P:response to toxic substance
GO:0010224--P:response to UV-B
GO:0010165--P:response to X-ray
GO:0006362--P:transcription elongation from RNA polymerase I promoter
GO:0006283--P:transcription-coupled nucleotide-excision repair

KEGG

ssc:106504057

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000518	Aegilops tauschii	53.37	0.00e+00	641.00
IUUC-Aml-002021	Ailuropoda melanoleuca	83.58	0.00e+00	2365.00
IUUC-Atr-002868	Amborella trichopoda	52.46	0.00e+00	630.00
IUUC-Apl-003989	Anas platyrhynchos	66.12	0.00e+00	1800.00
IUUC-Aca-004609	Anolis carolinensis	59.73	0.00e+00	1610.00
IUUC-Aly-005912	Arabidopsis lyrata	52.79	0.00e+00	633.00
IUUC-Ath-006812	Arabidopsis thaliana	52.61	0.00e+00	631.00
IUUC-Ago-007719	Ashbya gossypii	52.95	5.00e-180	624.00
IUUC-Acl-008050	Aspergillus clavatus	51.52	2.00e-180	626.00
IUUC-Afl-008677	Aspergillus flavus	52.34	2.00e-172	599.00
IUUC-Afu-008975	Aspergillus fumigatus	52.16	9.00e-180	624.00
IUUC-Ani-009464	Aspergillus nidulans	51.13	6.00e-179	621.00
IUUC-Ang-009516	Aspergillus niger	51.51	9.00e-169	587.00
IUUC-Aor-010057	Aspergillus oryzae	52.21	2.00e-174	605.00
IUUC-Ate-010307	Aspergillus terreus	52.34	4.00e-171	595.00
IUUC-Ame-011055	Astyanax mexicanus	64.68	0.00e+00	1271.00
IUUC-Bgr-012211	Blumeria graminis	50.48	5.00e-170	591.00
IUUC-Bta-012761	Bos taurus	80.83	0.00e+00	2186.00
IUUC-Bci-013603	Botrytis cinerea	51.77	0.00e+00	636.00
IUUC-Bdi-014031	Brachypodium distachyon	53.36	0.00e+00	637.00
IUUC-Bol-015096	Brassica oleracea	53.45	0.00e+00	642.00
IUUC-Bra-017583	Brassica rapa	53.44	0.00e+00	635.00
IUUC-Cel-018275	Caenorhabditis elegans	36.89	1.00e-106	380.00
IUUC-Cja-019733	Callithrix jacchus	86.59	0.00e+00	1791.00
IUUC-Cfa-020631	Canis familiaris	83.10	0.00e+00	2321.00
IUUC-Cpo-022218	Cavia porcellus	75.55	0.00e+00	1535.00
IUUC-Cre-022710	Chlamydomonas reinhardtii	49.56	1.00e-153	538.00
IUUC-Csa-023723	Chlorocebus sabaeus	84.05	0.00e+00	2351.00
IUUC-Cho-024312	Choloepus hoffmanni	76.27	0.00e+00	946.00
IUUC-Cin-025376	Ciona intestinalis	67.72	0.00e+00	786.00
IUUC-Cgl-026654	Colletotrichum gloeosporioides	49.92	2.00e-165	576.00
IUUC-Cme-027109	Cyanidioschyzon merolae	51.92	3.00e-157	548.00
IUUC-Dre-028672	Danio rerio	64.00	0.00e+00	1207.00
IUUC-Dno-028893	Dasypus novemcinctus	78.63	0.00e+00	2135.00
IUUC-Dor-031114	Dipodomys ordii	69.65	0.00e+00	1832.00
IUUC-Dse-031225	Dothistroma septosporum	53.24	0.00e+00	631.00
IUUC-Ete-032713	Echinops telfairi	72.83	0.00e+00	972.00
IUUC-Eca-034071	Equus caballus	83.38	0.00e+00	2328.00
IUUC-Eeu-034781	Erinaceus europaeus	81.87	0.00e+00	1779.00
IUUC-Fca-036561	Felis catus	84.00	0.00e+00	2353.00
IUUC-Fal-037343	Ficedula albicollis	63.38	0.00e+00	1685.00
IUUC-Fox-037667	Fusarium oxysporum	49.51	2.00e-159	556.00
IUUC-Fso-038331	Fusarium solani	46.08	2.00e-162	566.00
IUUC-Gmo-039132	Gadus morhua	81.45	0.00e+00	975.00
IUUC-Gga-040376	Gallus gallus	70.43	0.00e+00	1498.00
IUUC-Gac-042326	Gasterosteus aculeatus	61.57	0.00e+00	1162.00
IUUC-Gma-043401	Glycine max	51.23	2.00e-179	623.00
IUUC-Ggo-044844	Gorilla gorilla	84.10	0.00e+00	2362.00
IUUC-Hsa-046895	Homo sapiens	83.90	0.00e+00	2359.00
IUUC-Itr-048071	Ictidomys tridecemlineatus	79.46	0.00e+00	2254.00
IUUC-Kpa-049261	Komagataella pastoris	49.49	0.00e+00	663.00
IUUC-Lch-049934	Latimeria chalumnae	58.58	0.00e+00	1362.00
IUUC-Lpe-051249	Leersia perrieri	49.60	3.00e-148	519.00
IUUC-Loc-052591	Lepisosteus oculatus	60.85	0.00e+00	1516.00
IUUC-Lma-053210	Leptosphaeria maculans	49.42	2.00e-170	593.00
IUUC-Laf-054403	Loxodonta africana	80.39	0.00e+00	2215.00
IUUC-Mcc-054876	Macaca mulatta	84.33	0.00e+00	2388.00
IUUC-Meu-056545	Macropus eugenii	62.36	2.00e-134	473.00
IUUC-Mor-057145	Magnaporthe oryzae	48.95	2.00e-173	602.00
IUUC-Mpo-057493	Magnaporthe poae	49.84	3.00e-171	595.00
IUUC-Mtr-057734	Medicago truncatula	49.84	2.00e-179	623.00
IUUC-Mga-059402	Meleagris gallopavo	70.57	0.00e+00	1502.00
IUUC-Mmr-061791	Microcebus murinus	82.55	0.00e+00	2363.00
IUUC-Mdo-062148	Monodelphis domestica	70.30	0.00e+00	1909.00
IUUC-Mmu-063238	Mus musculus	77.06	0.00e+00	2135.00
IUUC-Mac-064440	Musa acuminata	51.78	1.00e-173	603.00
IUUC-Mpu-066112	Mustela putorius furo	83.58	0.00e+00	2326.00
IUUC-Mlu-067057	Myotis lucifugus	83.39	0.00e+00	2312.00
IUUC-Nfi-068617	Neosartorya fischeri	52.32	1.00e-180	626.00
IUUC-Ncr-068920	Neurospora crassa	50.08	4.00e-174	605.00
IUUC-Nle-069992	Nomascus leucogenys	84.16	0.00e+00	2336.00
IUUC-Opr-070929	Ochotona princeps	72.88	0.00e+00	1742.00
IUUC-Ont-071740	Oreochromis niloticus	63.06	0.00e+00	1250.00
IUUC-Oan-073380	Ornithorhynchus anatinus	68.02	0.00e+00	843.00
IUUC-Ocu-074143	Oryctolagus cuniculus	74.77	0.00e+00	1999.00
IUUC-Oba-075626	Oryza barthii	52.60	9.00e-180	624.00
IUUC-Obr-076240	Oryza brachyantha	52.35	0.00e+00	638.00
IUUC-Ogl-077187	Oryza glaberrima	52.60	6.00e-180	624.00
IUUC-Ogu-078629	Oryza glumaepatula	49.60	1.00e-143	503.00
IUUC-Oin-079268	Oryza indica	52.77	4.00e-180	625.00
IUUC-Olo-080567	Oryza longistaminata	49.41	1.00e-143	504.00
IUUC-Oni-082122	Oryza nivara	51.77	4.00e-180	625.00
IUUC-Opu-083477	Oryza punctata	52.42	0.00e+00	639.00
IUUC-Oru-084783	Oryza rufipogon	52.77	3.00e-180	625.00
IUUC-Osa-086206	Oryza sativa	52.77	1.00e-178	620.00
IUUC-Oga-088414	Otolemur garnettii	80.90	0.00e+00	2289.00
IUUC-Oar-089697	Ovis aries	85.20	0.00e+00	2377.00
IUUC-Ptr-090856	Pan troglodytes	84.17	0.00e+00	2383.00
IUUC-Pan-092521	Papio anubis	84.31	0.00e+00	2382.00
IUUC-Psi-093037	Pelodiscus sinensis	67.29	0.00e+00	1605.00
IUUC-Pma-094456	Petromyzon marinus	65.51	0.00e+00	834.00
IUUC-Pno-094861	Phaeosphaeria nodorum	49.11	1.00e-171	597.00
IUUC-Ppa-095711	Physcomitrella patens	49.84	0.00e+00	632.00
IUUC-Pfo-096223	Poecilia formosa	62.14	0.00e+00	1254.00
IUUC-Pab-098595	Pongo abelii	83.57	0.00e+00	2334.00
IUUC-Pop-099531	Populus trichocarpa	51.61	0.00e+00	635.00
IUUC-Pca-100770	Procavia capensis	78.35	0.00e+00	786.00
IUUC-Ppe-101528	Prunus persica	51.39	0.00e+00	631.00
IUUC-Pva-102247	Pteropus vampyrus	81.37	0.00e+00	1273.00
IUUC-Pte-104217	Pyrenophora teres	50.59	2.00e-172	599.00
IUUC-Pyt-104797	Pyrenophora triticirepentis	49.92	3.00e-174	605.00
IUUC-Rno-105742	Rattus norvegicus	76.29	0.00e+00	2063.00
IUUC-Sce-106234	Saccharomyces cerevisiae	51.48	0.00e+00	635.00
IUUC-Sha-106622	Sarcophilus harrisii	66.53	0.00e+00	1801.00
IUUC-Sja-107874	Schizosaccharomyces japonicus	51.72	0.00e+00	653.00
IUUC-Spo-108021	Schizosaccharomyces pombe	51.07	0.00e+00	661.00
IUUC-Ssl-108500	Sclerotinia sclerotiorum	52.24	0.00e+00	631.00
IUUC-Smo-109132	Selaginella moellendorffii	51.44	6.00e-175	607.00
IUUC-Sit-110066	Setaria italica	53.19	0.00e+00	639.00
IUUC-Sly-111833	Solanum lycopersicum	51.40	0.00e+00	643.00
IUUC-Stu-112189	Solanum tuberosum	53.37	0.00e+00	642.00
IUUC-Sar-113511	Sorex araneus	75.44	0.00e+00	1245.00
IUUC-Sbi-114606	Sorghum bicolor	53.19	0.00e+00	638.00
IUUC-Tgu-117153	Taeniopygia guttata	60.47	0.00e+00	1562.00
IUUC-Tru-118178	Takifugu rubripes	63.06	0.00e+00	1261.00
IUUC-Tsy-119524	Tarsius syrichta	82.55	0.00e+00	2347.00
IUUC-Tni-120546	Tetraodon nigroviridis	66.08	0.00e+00	1216.00
IUUC-Tca-121065	Theobroma cacao	52.32	0.00e+00	635.00
IUUC-Tre-121868	Trichoderma reesei	49.10	5.00e-162	565.00
IUUC-Tvi-122455	Trichoderma virens	44.50	4.00e-160	558.00
IUUC-Tae-123249	Triticum aestivum	52.42	0.00e+00	641.00
IUUC-Tur-126107	Triticum urartu	53.37	0.00e+00	642.00
IUUC-Tbe-127967	Tupaia belangeri	78.56	0.00e+00	1050.00
IUUC-Ttr-128768	Tursiops truncatus	86.68	0.00e+00	2489.00
IUUC-Vda-129884	Verticillium dahliae	51.16	2.00e-175	609.00
IUUC-Vpa-130521	Vicugna pacos	85.98	0.00e+00	1114.00
IUUC-Vvi-130838	Vitis vinifera	51.37	4.00e-180	625.00
IUUC-Xtr-132056	Xenopus tropicalis	56.37	0.00e+00	1098.00
IUUC-Xma-133113	Xiphophorus maculatus	62.66	0.00e+00	1249.00
IUUC-Yli-134344	Yarrowia lipolytica	52.68	0.00e+00	642.00
IUUC-Zma-134837	Zea mays	51.54	2.00e-180	626.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence