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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Dme-032189
UUCD1 version UUC-DrM-00351
Ensembl Protein ID FBpp0079780
UniProt Accession Q9VKQ3; WDR12_DROME
Genbank Protein ID AAF53009.1; AAM50731.1
Protein Name Ribosome biogenesis protein WDR12 homolog
Genbank Nucleotide ID AE014134; AY118871
Gene Name CG6724
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
FBgn0032298 FBtr0333491 FBpp0305675
FBgn0032298 FBtr0080191 FBpp0079780
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNARAID2
Protein-protein Interaction
IIDiRefIndexPINAMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.40e-37 123.5 250 280
UBD/Beta-Prp 2.30e-61 207.6 105 370
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDl 30
    gH +sv+++++ + t+l++Gs+D+t+kvWDl
   Q: 250 GHRESVSAVQWmDATTLLTGSWDHTLKVWDL 280
    8**********54399**************7 PP
   


   UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk...ilvtgseDrtikvwdls....tgkcvhtlkghedsvls 99
    h++ +++vk ++++++g++d+t+ +w ++ k + ++sgh+a+++av++++ ++ +v++s+D+t+ +w + + +cv++ kghe+ v s
   Q: 105 HDDWVSAVKA--RGKWILSGCYDNTLNLWTNKG-KHILTISGHTAPIKAVDWISLDEetgRFVSTSQDQTAMLWQWNvgsnSVECVSVCKGHERGVDS 199
    7788888888..*****************9988.778*************9987665677**************555445599*************** PP
   S: 100 lsfspsgdklvsGshdrtirvwdletgqclee...............tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
    +s+sp+g ++++Gs+d +++vw e + +e tl+gh+++v+ v++++ + l +Gs D t+++Wdl+ + + ++ + ++s
   Q: 200 VSVSPDGLRFATGSWDTMLKVWSAELDDAVEGsskrmkesgvrtpkiTLQGHRESVSAVQWMD-ATTLLTGSWDHTLKVWDLSLEGIKTEIST--NKS 294
    *****************************9989*****************************9.9999**************99999999975..9** PP
   S: 183 vyslsfdsngkelvsgsldgtvklwdlq..tgec.vrtlnghtdnvksvrfs.pnderlvsgssDgsiriWdlrsg 254
    + s+++ + ++++s d+ ++l+d + +g++ +t+ gh+++v+ v s ++ ++vsg+ D++ ++Wd+rs
   Q: 295 IFDASYSKLNRLILTASADKNLRLYDPRtnQGSVvRNTYLGHNAWVQTVMWStTEEFLFVSGAYDNQNKLWDCRSP 370
    ****************************7655553689**********999956667789*************985 PP
   

Organism Drosophila melanogaster
Functional Description
(View)

Functional Description



     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MDVDNGEGQV QVHLKTKQEH YAVPDVPYAI DGTVTTVELN TFVNALLRQK DGSSDTDFDF 60
LVFDEYLRGR LCDHLREKAI SFEDAIEIEY VERFPAPEPQ DCLLHDDWVS AVKARGKWIL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Dme-032189|E3,WD_repeat;UBD,Beta-Prp|Drosophila melanogaster
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTAGTGTTTT TGCATGTATT TGTTGCATTT ACCATCGTTC GTTTAAAAAC ACGCTTCTTT 60
TCAATTTAAT TTTACACAAC GATCTCCCGA AGGAAGAACC TCTAGTTTAG TGGTCAACAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Dme-032189|E3,WD_repeat;UBD,Beta-Prp|Drosophila melanogaster
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0005886--C:plasma membrane
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022008--P:neurogenesis
GO:0019233--P:sensory perception of pain

KEGG dme:Dmel_CG6724
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 28.77 2.00e-44 172.00
IUUC-Aml-001997 Ailuropoda melanoleuca 41.85 8.00e-88 316.00
IUUC-Atr-002544 Amborella trichopoda 29.66 4.00e-44 171.00
IUUC-Apl-003981 Anas platyrhynchos 43.37 4.00e-88 317.00
IUUC-Aca-004370 Anolis carolinensis 41.09 1.00e-97 349.00
IUUC-Aly-006455 Arabidopsis lyrata 30.14 4.00e-48 184.00
IUUC-Ath-006669 Arabidopsis thaliana 30.14 9.00e-45 173.00
IUUC-Ago-007864 Ashbya gossypii 27.19 7.00e-36 144.00
IUUC-Acl-008177 Aspergillus clavatus 26.45 8.00e-34 137.00
IUUC-Afl-008617 Aspergillus flavus 25.79 4.00e-32 131.00
IUUC-Afu-008752 Aspergillus fumigatus 25.16 5.00e-31 128.00
IUUC-Ani-009136 Aspergillus nidulans 26.60 1.00e-32 133.00
IUUC-Ang-009701 Aspergillus niger 25.85 8.00e-31 127.00
IUUC-Aor-009884 Aspergillus oryzae 25.79 1.00e-32 133.00
IUUC-Ame-011432 Astyanax mexicanus 40.24 4.00e-95 340.00
IUUC-Bgr-012218 Blumeria graminis 26.67 5.00e-28 117.00
IUUC-Bta-012829 Bos taurus 41.50 9.00e-91 326.00
IUUC-Bci-013953 Botrytis cinerea 25.62 4.00e-33 135.00
IUUC-Bdi-014351 Brachypodium distachyon 28.77 4.00e-41 161.00
IUUC-Bol-016190 Brassica oleracea 30.23 1.00e-43 169.00
IUUC-Bra-018095 Brassica rapa 29.97 6.00e-44 170.00
IUUC-Cel-018569 Caenorhabditis elegans 30.43 2.00e-48 185.00
IUUC-Cja-019468 Callithrix jacchus 41.75 3.00e-89 321.00
IUUC-Cfa-020471 Canis familiaris 40.78 7.00e-88 316.00
IUUC-Cpo-022260 Cavia porcellus 41.75 6.00e-89 320.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 29.10 3.00e-35 141.00
IUUC-Csa-023989 Chlorocebus sabaeus 41.50 5.00e-89 320.00
IUUC-Cho-024426 Choloepus hoffmanni 40.95 8.00e-71 259.00
IUUC-Cin-025789 Ciona intestinalis 39.28 3.00e-89 321.00
IUUC-Cne-027063 Cryptococcus neoformans 23.38 2.00e-19 89.70
IUUC-Dre-027907 Danio rerio 41.95 7.00e-98 350.00
IUUC-Dno-029225 Dasypus novemcinctus 40.78 2.00e-89 321.00
IUUC-Dor-031082 Dipodomys ordii 33.33 2.00e-57 216.00
IUUC-Dse-031308 Dothistroma septosporum 26.62 7.00e-35 140.00
IUUC-Ete-032247 Echinops telfairi 38.11 8.00e-80 290.00
IUUC-Eca-034285 Equus caballus 41.75 3.00e-91 327.00
IUUC-Eeu-035322 Erinaceus europaeus 36.71 1.00e-72 266.00
IUUC-Fca-036114 Felis catus 40.53 1.00e-88 319.00
IUUC-Fal-036891 Ficedula albicollis 43.25 5.00e-83 300.00
IUUC-Fox-037965 Fusarium oxysporum 24.58 4.00e-28 118.00
IUUC-Fso-038244 Fusarium solani 25.63 1.00e-31 130.00
IUUC-Gmo-039040 Gadus morhua 42.58 9.00e-101 359.00
IUUC-Ggr-040093 Gaeumannomyces graminis 25.89 1.00e-12 67.00
IUUC-Gga-040610 Gallus gallus 41.99 2.00e-96 345.00
IUUC-Gac-042117 Gasterosteus aculeatus 42.82 2.00e-98 352.00
IUUC-Gma-043756 Glycine max 32.04 6.00e-51 194.00
IUUC-Ggo-045179 Gorilla gorilla 41.75 1.00e-88 319.00
IUUC-Hsa-046114 Homo sapiens 41.75 2.00e-88 318.00
IUUC-Hvu-047331 Hordeum vulgare 28.83 6.00e-40 157.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 41.50 1.00e-90 325.00
IUUC-Kpa-049304 Komagataella pastoris 26.71 5.00e-37 147.00
IUUC-Lch-050655 Latimeria chalumnae 39.52 3.00e-67 248.00
IUUC-Lpe-051675 Leersia perrieri 29.52 3.00e-45 175.00
IUUC-Loc-052868 Lepisosteus oculatus 40.00 9.00e-100 356.00
IUUC-Lma-053258 Leptosphaeria maculans 25.37 4.00e-35 143.00
IUUC-Laf-053993 Loxodonta africana 40.78 2.00e-90 325.00
IUUC-Mcc-055128 Macaca mulatta 34.79 3.00e-66 244.00
IUUC-Meu-056501 Macropus eugenii 40.68 1.00e-71 262.00
IUUC-Mor-057114 Magnaporthe oryzae 27.80 3.00e-32 132.00
IUUC-Mtr-058367 Medicago truncatula 30.82 4.00e-46 178.00
IUUC-Mla-059107 Melampsora laricipopulina 26.65 2.00e-29 122.00
IUUC-Mga-059745 Meleagris gallopavo 42.14 1.00e-92 332.00
IUUC-Mvi-060362 Microbotryum violaceum 24.28 2.00e-28 119.00
IUUC-Mdo-062257 Monodelphis domestica 40.05 6.00e-93 333.00
IUUC-Mmu-063546 Mus musculus 40.88 2.00e-90 325.00
IUUC-Mac-065540 Musa acuminata 30.81 5.00e-48 184.00
IUUC-Mpu-066284 Mustela putorius furo 40.78 4.00e-89 321.00
IUUC-Mlu-067241 Myotis lucifugus 41.26 5.00e-90 323.00
IUUC-Nfi-068260 Neosartorya fischeri 25.37 8.00e-33 134.00
IUUC-Ncr-068719 Neurospora crassa 26.73 4.00e-24 105.00
IUUC-Nle-068981 Nomascus leucogenys 41.26 1.00e-86 312.00
IUUC-Opr-071218 Ochotona princeps 39.24 5.00e-84 303.00
IUUC-Ont-071646 Oreochromis niloticus 41.63 2.00e-95 342.00
IUUC-Oan-073453 Ornithorhynchus anatinus 42.48 1.00e-103 369.00
IUUC-Ocu-074008 Oryctolagus cuniculus 41.50 2.00e-91 328.00
IUUC-Oba-075712 Oryza barthii 26.38 8.00e-33 134.00
IUUC-Obr-076721 Oryza brachyantha 28.98 5.00e-45 174.00
IUUC-Ogl-077229 Oryza glaberrima 29.29 4.00e-44 171.00
IUUC-Ogu-078977 Oryza glumaepatula 26.38 4.00e-33 134.00
IUUC-Oin-079683 Oryza indica 29.29 1.00e-44 172.00
IUUC-Olo-080291 Oryza longistaminata 29.07 7.00e-23 100.00
IUUC-Ome-081834 Oryza meridionalis 29.14 3.00e-45 175.00
IUUC-Oni-082507 Oryza nivara 28.16 1.00e-39 156.00
IUUC-Opu-083396 Oryza punctata 29.29 1.00e-44 173.00
IUUC-Oru-085220 Oryza rufipogon 28.16 3.00e-39 155.00
IUUC-Osa-085767 Oryza sativa 29.29 1.00e-44 172.00
IUUC-Ola-087420 Oryzias latipes 41.85 2.00e-97 348.00
IUUC-Olu-087740 Ostreococcus lucimarinus 26.27 2.00e-30 126.00
IUUC-Oga-088264 Otolemur garnettii 41.50 2.00e-89 321.00
IUUC-Oar-089335 Ovis aries 41.26 3.00e-90 324.00
IUUC-Ptr-091320 Pan troglodytes 41.75 2.00e-88 318.00
IUUC-Pan-092833 Papio anubis 41.50 1.00e-87 315.00
IUUC-Psi-093504 Pelodiscus sinensis 41.26 3.00e-91 328.00
IUUC-Pma-094189 Petromyzon marinus 41.75 1.00e-92 332.00
IUUC-Pno-094929 Phaeosphaeria nodorum 24.68 4.00e-30 125.00
IUUC-Ppa-095429 Physcomitrella patens 32.41 2.00e-55 209.00
IUUC-Pfo-096337 Poecilia formosa 41.93 3.00e-100 358.00
IUUC-Pab-097571 Pongo abelii 41.50 2.00e-88 318.00
IUUC-Pop-099977 Populus trichocarpa 31.76 6.00e-52 197.00
IUUC-Pca-100394 Procavia capensis 38.60 5.00e-78 283.00
IUUC-Ppe-101848 Prunus persica 28.44 2.00e-44 172.00
IUUC-Pva-102921 Pteropus vampyrus 42.13 6.00e-45 174.00
IUUC-Pgr-103637 Puccinia graminis 25.76 8.00e-27 114.00
IUUC-Ptt-103781 Puccinia triticina 25.76 8.00e-26 110.00
IUUC-Pte-104135 Pyrenophora teres 25.70 3.00e-30 127.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 25.32 8.00e-33 134.00
IUUC-Rno-105114 Rattus norvegicus 41.02 4.00e-90 324.00
IUUC-Sce-106401 Saccharomyces cerevisiae 27.86 2.00e-36 146.00
IUUC-Sha-107122 Sarcophilus harrisii 40.49 2.00e-87 315.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 27.07 2.00e-39 155.00
IUUC-Spo-108134 Schizosaccharomyces pombe 23.84 1.00e-33 136.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 26.03 6.00e-32 130.00
IUUC-Smo-108720 Selaginella moellendorffii 29.38 2.00e-41 162.00
IUUC-Sit-110354 Setaria italica 30.32 1.00e-44 173.00
IUUC-Sly-111023 Solanum lycopersicum 28.38 1.00e-45 176.00
IUUC-Stu-112778 Solanum tuberosum 30.68 6.00e-49 187.00
IUUC-Sar-113596 Sorex araneus 36.61 2.00e-65 242.00
IUUC-Sbi-114193 Sorghum bicolor 30.56 9.00e-45 173.00
IUUC-Sre-115002 Sporisorium reilianum 25.17 1.00e-14 73.60
IUUC-Ssc-116066 Sus scrofa 41.75 5.00e-91 327.00
IUUC-Tgu-117048 Taeniopygia guttata 43.65 6.00e-87 313.00
IUUC-Tsy-119573 Tarsius syrichta 26.90 2.00e-41 161.00
IUUC-Tni-119820 Tetraodon nigroviridis 42.34 3.00e-94 337.00
IUUC-Tca-121605 Theobroma cacao 30.38 2.00e-44 172.00
IUUC-Tre-121947 Trichoderma reesei 25.52 1.00e-30 127.00
IUUC-Tvi-122481 Trichoderma virens 25.73 1.00e-31 130.00
IUUC-Tae-125861 Triticum aestivum 29.00 5.00e-45 174.00
IUUC-Tur-126586 Triticum urartu 29.34 3.00e-42 164.00
IUUC-Tme-126900 Tuber melanosporum 28.37 1.00e-44 173.00
IUUC-Tbe-127736 Tupaia belangeri 30.38 3.00e-51 194.00
IUUC-Ttr-129041 Tursiops truncatus 33.74 8.00e-66 243.00
IUUC-Vpa-130260 Vicugna pacos 41.02 8.00e-90 323.00
IUUC-Vvi-131009 Vitis vinifera 31.32 8.00e-48 183.00
IUUC-Xtr-132083 Xenopus tropicalis 40.81 3.00e-93 334.00
IUUC-Xma-133094 Xiphophorus maculatus 41.45 3.00e-99 354.00
IUUC-Yli-134531 Yarrowia lipolytica 23.83 1.00e-21 97.10
IUUC-Zma-135509 Zea mays 29.98 5.00e-46 177.00
Created Date 25-Jun-2017

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