iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Fso-038244

Ensembl Protein ID

NechaP96216

UniProt Accession

C7YU31; C7YU31_NECH7

Genbank Protein ID

EEU44342.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

GG698900

Gene Name

YTM1; NECHADRAFT_96216

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NechaG96216	NechaT96216	NechaP96216

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-29	99.9	165	195

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDl 30
           gHt +v+++++ s + lvs++ D ++ vWD+
   Q: 165  GHTQRVNAVKWiSQKQLVSAGLDRKVIVWDY 195
           8***********8899**************7 PP

Organism

Fusarium solani

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MGDVAQVKVV FTTTEQDIAL PESKQQLLVP AGKGSDIKRY GLSRILNSES MLDTSSAIPL 60
DFLANGTFLR TSIQEYLASN GLSSESTLTL QYVRSLLPPV YEASFEHDDW VGGVDLLSIT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGAGACG TTGCGCAGGT GAAGGTCGTC TTCACCACCA CTGAGCAGGA TATTGCGCTC 60
CCAGAGTCTA AGCAGCAACT GCTCGTGCCT GCAGGCAAGT CATTATCTTG AACTCTTCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

nhe:NECHADRAFT_96216

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	26.25	2.00e-35	141.00
IUUC-Aml-001997	Ailuropoda melanoleuca	27.59	3.00e-32	130.00
IUUC-Atr-002544	Amborella trichopoda	24.03	2.00e-26	112.00
IUUC-Apl-003981	Anas platyrhynchos	26.38	5.00e-35	139.00
IUUC-Aca-004370	Anolis carolinensis	25.17	4.00e-35	140.00
IUUC-Aly-006455	Arabidopsis lyrata	26.81	3.00e-34	137.00
IUUC-Ath-006669	Arabidopsis thaliana	26.34	5.00e-32	130.00
IUUC-Ago-007864	Ashbya gossypii	40.66	2.00e-85	307.00
IUUC-Acl-008177	Aspergillus clavatus	52.08	1.00e-125	441.00
IUUC-Afl-008617	Aspergillus flavus	52.71	1.00e-122	431.00
IUUC-Afu-008752	Aspergillus fumigatus	50.62	4.00e-117	412.00
IUUC-Ani-009136	Aspergillus nidulans	49.48	1.00e-120	424.00
IUUC-Ang-009701	Aspergillus niger	50.53	1.00e-116	411.00
IUUC-Aor-009884	Aspergillus oryzae	52.92	3.00e-123	433.00
IUUC-Ate-010472	Aspergillus terreus	52.69	7.00e-79	285.00
IUUC-Ame-011432	Astyanax mexicanus	25.48	1.00e-38	152.00
IUUC-Bgr-012218	Blumeria graminis	57.92	9.00e-139	484.00
IUUC-Bta-012829	Bos taurus	25.16	4.00e-31	127.00
IUUC-Bci-013953	Botrytis cinerea	57.84	3.00e-149	519.00
IUUC-Bdi-014351	Brachypodium distachyon	25.99	7.00e-31	126.00
IUUC-Bol-016190	Brassica oleracea	25.79	5.00e-33	133.00
IUUC-Bra-017876	Brassica rapa	26.45	8.00e-34	136.00
IUUC-Cja-019468	Callithrix jacchus	26.43	1.00e-31	129.00
IUUC-Cfa-020471	Canis familiaris	26.67	5.00e-30	123.00
IUUC-Cpo-022260	Cavia porcellus	26.64	2.00e-31	128.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	30.60	5.00e-35	140.00
IUUC-Csa-023989	Chlorocebus sabaeus	26.22	6.00e-31	126.00
IUUC-Cho-024426	Choloepus hoffmanni	25.00	2.00e-22	98.20
IUUC-Cin-025789	Ciona intestinalis	27.25	5.00e-33	133.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	70.05	3.00e-62	228.00
IUUC-Cne-027063	Cryptococcus neoformans	24.65	7.00e-21	93.20
IUUC-Dre-027907	Danio rerio	25.70	3.00e-37	147.00
IUUC-Dno-029225	Dasypus novemcinctus	26.22	1.00e-31	129.00
IUUC-Dor-031082	Dipodomys ordii	20.99	2.00e-16	78.20
IUUC-Dse-031308	Dothistroma septosporum	45.30	2.00e-107	380.00
IUUC-Dme-032189	Drosophila melanogaster	25.63	4.00e-32	130.00
IUUC-Ete-032247	Echinops telfairi	24.41	8.00e-25	106.00
IUUC-Eca-034285	Equus caballus	26.64	2.00e-32	131.00
IUUC-Fca-036114	Felis catus	27.36	2.00e-32	131.00
IUUC-Fal-036891	Ficedula albicollis	25.66	1.00e-29	121.00
IUUC-Fox-037965	Fusarium oxysporum	92.00	0.00e+00	872.00
IUUC-Gmo-039040	Gadus morhua	26.39	5.00e-40	156.00
IUUC-Ggr-040093	Gaeumannomyces graminis	54.79	7.00e-127	445.00
IUUC-Gga-040610	Gallus gallus	25.90	4.00e-34	137.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.82	1.00e-38	152.00
IUUC-Gma-043756	Glycine max	27.46	9.00e-35	139.00
IUUC-Ggo-045179	Gorilla gorilla	26.64	1.00e-31	129.00
IUUC-Hsa-046114	Homo sapiens	26.64	6.00e-31	126.00
IUUC-Hvu-047331	Hordeum vulgare	26.10	5.00e-29	120.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.99	2.00e-31	128.00
IUUC-Kpa-049304	Komagataella pastoris	40.71	4.00e-88	316.00
IUUC-Lch-050655	Latimeria chalumnae	26.36	7.00e-25	105.00
IUUC-Lpe-051675	Leersia perrieri	27.35	3.00e-36	144.00
IUUC-Loc-052868	Lepisosteus oculatus	25.37	5.00e-37	146.00
IUUC-Lma-053258	Leptosphaeria maculans	45.36	1.00e-103	369.00
IUUC-Laf-053993	Loxodonta africana	26.64	2.00e-32	131.00
IUUC-Mcc-055128	Macaca mulatta	23.04	3.00e-16	77.40
IUUC-Meu-056501	Macropus eugenii	25.21	3.00e-31	127.00
IUUC-Mor-057114	Magnaporthe oryzae	58.63	3.00e-153	533.00
IUUC-Mpo-057463	Magnaporthe poae	56.00	2.00e-53	199.00
IUUC-Mtr-058367	Medicago truncatula	24.49	1.00e-26	112.00
IUUC-Mla-059107	Melampsora laricipopulina	30.68	2.00e-41	161.00
IUUC-Mga-059745	Meleagris gallopavo	25.90	1.00e-33	135.00
IUUC-Mvi-060362	Microbotryum violaceum	28.63	2.00e-34	138.00
IUUC-Mdo-062257	Monodelphis domestica	25.00	6.00e-34	136.00
IUUC-Mmu-063546	Mus musculus	26.44	8.00e-33	132.00
IUUC-Mac-065540	Musa acuminata	24.78	4.00e-29	120.00
IUUC-Mpu-066284	Mustela putorius furo	26.43	7.00e-33	133.00
IUUC-Mlu-067241	Myotis lucifugus	26.43	4.00e-33	134.00
IUUC-Nfi-068260	Neosartorya fischeri	51.46	3.00e-120	423.00
IUUC-Ncr-068719	Neurospora crassa	61.08	3.00e-148	516.00
IUUC-Nle-068981	Nomascus leucogenys	26.00	8.00e-30	122.00
IUUC-Opr-071218	Ochotona princeps	25.24	2.00e-29	121.00
IUUC-Ont-071646	Oreochromis niloticus	26.21	5.00e-35	140.00
IUUC-Oan-073453	Ornithorhynchus anatinus	24.31	2.00e-37	147.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.80	3.00e-33	134.00
IUUC-Oba-075712	Oryza barthii	24.48	5.00e-21	94.00
IUUC-Obr-076721	Oryza brachyantha	27.79	7.00e-37	146.00
IUUC-Ogl-077229	Oryza glaberrima	27.65	3.00e-36	144.00
IUUC-Ogu-078977	Oryza glumaepatula	24.48	2.00e-21	94.70
IUUC-Oin-079683	Oryza indica	27.65	2.00e-36	145.00
IUUC-Olo-080291	Oryza longistaminata	28.84	9.00e-22	95.50
IUUC-Ome-081834	Oryza meridionalis	27.44	5.00e-36	143.00
IUUC-Oni-082507	Oryza nivara	25.99	9.00e-32	129.00
IUUC-Opu-083396	Oryza punctata	27.85	1.00e-35	142.00
IUUC-Oru-085220	Oryza rufipogon	25.99	2.00e-31	128.00
IUUC-Osa-085767	Oryza sativa	27.65	2.00e-36	145.00
IUUC-Ola-087420	Oryzias latipes	25.99	5.00e-37	146.00
IUUC-Olu-087740	Ostreococcus lucimarinus	24.46	3.00e-21	94.40
IUUC-Oga-088264	Otolemur garnettii	25.79	2.00e-30	124.00
IUUC-Oar-089335	Ovis aries	25.16	7.00e-31	126.00
IUUC-Ptr-091320	Pan troglodytes	26.64	6.00e-31	126.00
IUUC-Pan-092833	Papio anubis	26.22	2.00e-31	128.00
IUUC-Psi-093504	Pelodiscus sinensis	26.21	2.00e-31	128.00
IUUC-Pma-094189	Petromyzon marinus	25.80	4.00e-34	137.00
IUUC-Pno-094929	Phaeosphaeria nodorum	47.45	7.00e-108	382.00
IUUC-Ppa-095429	Physcomitrella patens	28.48	9.00e-40	155.00
IUUC-Pfo-096337	Poecilia formosa	24.73	5.00e-38	150.00
IUUC-Pab-097571	Pongo abelii	26.64	6.00e-31	126.00
IUUC-Pop-099977	Populus trichocarpa	24.69	8.00e-33	132.00
IUUC-Pca-100394	Procavia capensis	24.83	5.00e-25	107.00
IUUC-Ppe-101848	Prunus persica	25.26	4.00e-33	134.00
IUUC-Pgr-103637	Puccinia graminis	29.94	2.00e-46	178.00
IUUC-Ptt-103781	Puccinia triticina	30.75	8.00e-46	176.00
IUUC-Pte-104135	Pyrenophora teres	46.26	2.00e-103	369.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	45.42	2.00e-101	360.00
IUUC-Rno-105114	Rattus norvegicus	26.64	2.00e-32	131.00
IUUC-Sce-106401	Saccharomyces cerevisiae	37.47	3.00e-81	293.00
IUUC-Sha-107122	Sarcophilus harrisii	25.05	9.00e-32	129.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	34.88	6.00e-74	269.00
IUUC-Spo-108134	Schizosaccharomyces pombe	34.26	3.00e-70	257.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	57.29	3.00e-153	533.00
IUUC-Smo-108720	Selaginella moellendorffii	26.34	1.00e-29	122.00
IUUC-Sit-110354	Setaria italica	28.07	2.00e-34	138.00
IUUC-Sly-111178	Solanum lycopersicum	27.15	3.00e-33	134.00
IUUC-Stu-112778	Solanum tuberosum	25.20	7.00e-29	119.00
IUUC-Sbi-114193	Sorghum bicolor	27.75	2.00e-34	137.00
IUUC-Sre-115002	Sporisorium reilianum	25.82	6.00e-28	117.00
IUUC-Ssc-116066	Sus scrofa	26.22	3.00e-32	130.00
IUUC-Tgu-117048	Taeniopygia guttata	26.38	1.00e-34	138.00
IUUC-Tni-119820	Tetraodon nigroviridis	25.58	1.00e-35	142.00
IUUC-Tca-121605	Theobroma cacao	27.08	2.00e-35	141.00
IUUC-Tre-121947	Trichoderma reesei	84.14	0.00e+00	793.00
IUUC-Tvi-122481	Trichoderma virens	84.36	0.00e+00	798.00
IUUC-Tae-123847	Triticum aestivum	26.25	2.00e-35	141.00
IUUC-Tur-126586	Triticum urartu	25.84	3.00e-33	134.00
IUUC-Tme-126900	Tuber melanosporum	42.92	6.00e-93	332.00
IUUC-Uma-129628	Ustilago maydis	33.20	4.00e-19	87.80
IUUC-Vpa-130260	Vicugna pacos	26.43	7.00e-33	132.00
IUUC-Vvi-131009	Vitis vinifera	26.58	1.00e-33	135.00
IUUC-Xtr-132083	Xenopus tropicalis	25.68	3.00e-34	137.00
IUUC-Xma-133094	Xiphophorus maculatus	25.79	2.00e-38	151.00
IUUC-Yli-134531	Yarrowia lipolytica	35.75	1.00e-65	242.00
IUUC-Zma-135509	Zea mays	28.28	4.00e-35	140.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence