iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d045665	Zm00001d045665_T004	Zm00001d045665_T004
Zm00001d045665	Zm00001d045665_T005	Zm00001d045665_T005
Zm00001d045665	Zm00001d045665_T003	Zm00001d045665_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.90e-21	77.5	160	201
ULD/UDP/UBQ/UBQ_PIM	7.70e-23	82.2	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ ++q+ +MG   ++r+++++aLraa+nn+e+A++yL++g
   Q: 160  LEQTIQQILDMGggtWERDTVVRALRAAYNNPERAIDYLYSG 201
           589************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkl+vktlkg++fe+e+s+d +v+++K  i++ +g   + ++qq LIy+GkiLkD+ttL+++g+ ++s+++++++k+k
   Q: 1    MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGqstYRADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
           99**********************************99*************************************987 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MKLNVKTLKG TNFEIEASPD ASVADVKRII ETTQGQSTYR ADQQMLIYQG KILKDETTLE 60
SNGVAENSFL VIMLSKAKAS SSGASTATTA KAPATLAQPA APVAPAASVA RTPTQAPVAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTTTTTTC CCAACCGGGC ACACTTCCGT TTACATCTAT CCCCTCAGCC AGCGGCCAGC 60
GCACAGCGCA ACCGCCTCAA AACACCCGCG TGTGCGTGAC AGTGCAGCTA GATCCACCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000126	Aegilops tauschii	79.27	3.00e-93	334.00
IUUC-Atr-003116	Amborella trichopoda	66.03	8.00e-85	306.00
IUUC-Acl-008212	Aspergillus clavatus	37.25	2.00e-26	112.00
IUUC-Afl-008605	Aspergillus flavus	38.46	5.00e-30	124.00
IUUC-Afu-008877	Aspergillus fumigatus	36.40	5.00e-26	111.00
IUUC-Aor-010032	Aspergillus oryzae	38.31	4.00e-30	125.00
IUUC-Bgr-012056	Blumeria graminis	32.03	4.00e-26	111.00
IUUC-Bci-013933	Botrytis cinerea	38.00	1.00e-22	100.00
IUUC-Bdi-014718	Brachypodium distachyon	73.81	6.00e-136	476.00
IUUC-Gma-043937	Glycine max	66.41	7.00e-91	327.00
IUUC-Mtr-058148	Medicago truncatula	65.65	1.00e-92	332.00
IUUC-Nfi-068390	Neosartorya fischeri	36.40	7.00e-26	110.00
IUUC-Obr-076631	Oryza brachyantha	77.41	6.00e-98	350.00
IUUC-Ppa-095654	Physcomitrella patens	57.85	5.00e-75	274.00
IUUC-Pop-099642	Populus trichocarpa	67.43	6.00e-87	313.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	37.86	1.00e-15	76.60
IUUC-Sit-110235	Setaria italica	81.01	5.00e-107	380.00
IUUC-Tur-126101	Triticum urartu	78.91	9.00e-93	333.00
IUUC-Tme-127092	Tuber melanosporum	34.56	2.00e-37	149.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence