iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107864

Ensembl Protein ID

EEB08308

UniProt Accession

B6K4A1; B6K4A1_SCHJY

Genbank Protein ID

EEB08308.1

Protein Name

Damaged DNA binding protein Ddb1

Genbank Nucleotide ID

KE651167

Gene Name

SJAG_03454

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_03454	EEB08308	EEB08308

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/DCX/DDB1	25.81	3.00e-91	334.00	IUUC-Ath-006658
E3 adaptor/Cullin RING/DCX/DDB1	21.86	1.00e-46	185.00	IUUC-Cel-018239
E3 adaptor/Cullin RING/DCX/DDB1	23.86	2.00e-63	241.00	IUUC-Dme-031940
E3 adaptor/Cullin RING/DCX/DDB1	23.57	1.00e-72	272.00	IUUC-Hsa-046709

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MSYVSSIHKF SSVKDAVSCR LDGKNWNVVV LKTNRIEIYG FEGDKLVQLG SSTVFSKVRS 60
IKSFRPPLST KDHLIVTVSP FSYFTVTWDP DKKQFINEVT AQPPASTFFL NKQRNPKLLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTATCTTCA ATCATAGGAG CGATTATGAT ATGTTCATAC AAAATAATGC AAAATACTAA 60
AGCACATAAC TAGTTATAGA GACAAGCACT TCAACATATA CTTCGTTACA AAACAAGCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom

Pfam

PF03178--CPSF_A

Gene Ontology

GO:0005829--C:cytosol
GO:0070912--C:Ddb1-Ckn1 complex
GO:0070913--C:Ddb1-Wdr21 complex
GO:0005730--C:nucleolus
GO:0035861--C:site of double-strand break
GO:0003676--F:nucleic acid binding
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0090052--P:regulation of chromatin silencing at centromere
GO:0090054--P:regulation of chromatin silencing at silent mating-type cassette
GO:0006283--P:transcription-coupled nucleotide-excision repair

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000120	Aegilops tauschii	24.04	5.00e-82	297.00
IUUC-Aml-002096	Ailuropoda melanoleuca	24.02	3.00e-77	281.00
IUUC-Atr-002742	Amborella trichopoda	24.65	1.00e-92	332.00
IUUC-Apl-003624	Anas platyrhynchos	24.55	3.00e-74	271.00
IUUC-Aca-005085	Anolis carolinensis	24.11	2.00e-78	286.00
IUUC-Aly-005857	Arabidopsis lyrata	25.99	7.00e-96	343.00
IUUC-Ath-006658	Arabidopsis thaliana	26.08	8.00e-97	346.00
IUUC-Acl-008149	Aspergillus clavatus	23.79	7.00e-67	247.00
IUUC-Afl-008549	Aspergillus flavus	24.93	2.00e-68	251.00
IUUC-Afu-009076	Aspergillus fumigatus	24.70	8.00e-80	290.00
IUUC-Ani-009302	Aspergillus nidulans	23.51	3.00e-62	231.00
IUUC-Ang-009636	Aspergillus niger	24.63	2.00e-59	222.00
IUUC-Aor-010073	Aspergillus oryzae	25.36	6.00e-74	270.00
IUUC-Ate-010422	Aspergillus terreus	24.02	1.00e-63	236.00
IUUC-Ame-011643	Astyanax mexicanus	23.22	6.00e-59	220.00
IUUC-Bgr-012164	Blumeria graminis	24.69	2.00e-67	249.00
IUUC-Bta-012494	Bos taurus	24.02	7.00e-77	280.00
IUUC-Bci-013957	Botrytis cinerea	23.21	1.00e-68	253.00
IUUC-Bdi-014186	Brachypodium distachyon	24.56	3.00e-89	321.00
IUUC-Bol-015922	Brassica oleracea	26.21	9.00e-94	336.00
IUUC-Bra-017988	Brassica rapa	25.49	5.00e-94	337.00
IUUC-Cel-018239	Caenorhabditis elegans	22.28	2.00e-51	196.00
IUUC-Cja-019165	Callithrix jacchus	23.94	1.00e-76	280.00
IUUC-Cfa-020406	Canis familiaris	24.02	3.00e-77	281.00
IUUC-Cpo-022154	Cavia porcellus	23.94	2.00e-76	278.00
IUUC-Cre-022557	Chlamydomonas reinhardtii	22.20	2.00e-38	152.00
IUUC-Csa-024061	Chlorocebus sabaeus	23.94	1.00e-76	280.00
IUUC-Cho-024554	Choloepus hoffmanni	23.02	1.00e-27	117.00
IUUC-Cin-025466	Ciona intestinalis	23.21	5.00e-75	274.00
IUUC-Csv-026370	Ciona savignyi	24.19	7.00e-68	250.00
IUUC-Cgl-026595	Colletotrichum gloeosporioides	24.23	4.00e-72	265.00
IUUC-Cme-027342	Cyanidioschyzon merolae	21.95	4.00e-41	162.00
IUUC-Dre-027448	Danio rerio	26.36	1.00e-40	159.00
IUUC-Dno-029794	Dasypus novemcinctus	23.35	1.00e-68	253.00
IUUC-Dor-030789	Dipodomys ordii	21.21	7.00e-14	71.20
IUUC-Dse-031491	Dothistroma septosporum	24.04	4.00e-72	264.00
IUUC-Dme-031940	Drosophila melanogaster	24.24	7.00e-66	243.00
IUUC-Ete-032913	Echinops telfairi	31.79	6.00e-17	81.30
IUUC-Eca-033777	Equus caballus	24.19	2.00e-76	278.00
IUUC-Eeu-034900	Erinaceus europaeus	24.15	3.00e-26	112.00
IUUC-Fca-035869	Felis catus	24.02	3.00e-77	281.00
IUUC-Fal-036777	Ficedula albicollis	24.15	2.00e-75	275.00
IUUC-Fox-037954	Fusarium oxysporum	25.17	9.00e-72	263.00
IUUC-Fso-038292	Fusarium solani	24.09	4.00e-75	274.00
IUUC-Gmo-038815	Gadus morhua	28.53	2.00e-27	115.00
IUUC-Ggr-039907	Gaeumannomyces graminis	24.04	3.00e-66	244.00
IUUC-Gga-040995	Gallus gallus	24.36	3.00e-77	281.00
IUUC-Gac-042390	Gasterosteus aculeatus	24.69	3.00e-67	248.00
IUUC-Gma-042743	Glycine max	25.24	2.00e-92	332.00
IUUC-Ggo-044891	Gorilla gorilla	23.96	2.00e-75	275.00
IUUC-Hsa-046709	Homo sapiens	23.94	1.00e-76	280.00
IUUC-Hvu-047504	Hordeum vulgare	24.87	3.00e-87	314.00
IUUC-Itr-048678	Ictidomys tridecemlineatus	24.11	2.00e-77	282.00
IUUC-Lch-050565	Latimeria chalumnae	24.47	6.00e-78	283.00
IUUC-Lpe-051260	Leersia perrieri	25.36	6.00e-93	333.00
IUUC-Loc-052091	Lepisosteus oculatus	24.47	1.00e-53	203.00
IUUC-Lma-053246	Leptosphaeria maculans	25.63	6.00e-79	287.00
IUUC-Laf-053502	Loxodonta africana	23.76	2.00e-77	281.00
IUUC-Mcc-054802	Macaca mulatta	23.97	2.00e-74	272.00
IUUC-Meu-056808	Macropus eugenii	22.92	9.00e-41	160.00
IUUC-Mor-057253	Magnaporthe oryzae	24.84	2.00e-70	258.00
IUUC-Mpo-057562	Magnaporthe poae	24.58	3.00e-69	255.00
IUUC-Mtr-057743	Medicago truncatula	25.44	1.00e-91	329.00
IUUC-Mla-059154	Melampsora laricipopulina	22.49	4.00e-38	151.00
IUUC-Mga-059824	Meleagris gallopavo	25.05	5.00e-72	264.00
IUUC-Mvi-060279	Microbotryum violaceum	23.01	2.00e-50	192.00
IUUC-Mmr-061215	Microcebus murinus	24.02	2.00e-77	281.00
IUUC-Mdo-062028	Monodelphis domestica	24.31	2.00e-58	219.00
IUUC-Mmu-064327	Mus musculus	24.02	2.00e-77	282.00
IUUC-Mac-065445	Musa acuminata	25.66	1.00e-91	329.00
IUUC-Mpu-065814	Mustela putorius furo	23.74	5.00e-70	257.00
IUUC-Mlu-067136	Myotis lucifugus	24.49	2.00e-76	279.00
IUUC-Nfi-068355	Neosartorya fischeri	24.62	4.00e-76	278.00
IUUC-Ncr-068620	Neurospora crassa	23.89	6.00e-73	267.00
IUUC-Nle-069566	Nomascus leucogenys	23.73	1.00e-72	266.00
IUUC-Opr-070915	Ochotona princeps	23.77	3.00e-53	202.00
IUUC-Ont-071753	Oreochromis niloticus	24.94	2.00e-76	279.00
IUUC-Oan-073187	Ornithorhynchus anatinus	24.93	9.00e-73	266.00
IUUC-Ocu-074619	Oryctolagus cuniculus	24.02	1.00e-77	282.00
IUUC-Oba-075091	Oryza barthii	24.64	3.00e-56	212.00
IUUC-Obr-076425	Oryza brachyantha	25.20	5.00e-89	322.00
IUUC-Ogu-078794	Oryza glumaepatula	24.73	7.00e-91	327.00
IUUC-Oin-079725	Oryza indica	25.09	5.00e-90	324.00
IUUC-Olo-080842	Oryza longistaminata	24.17	3.00e-77	282.00
IUUC-Ome-081818	Oryza meridionalis	25.00	1.00e-91	330.00
IUUC-Oni-082879	Oryza nivara	24.58	2.00e-85	308.00
IUUC-Opu-083361	Oryza punctata	24.67	7.00e-90	323.00
IUUC-Oru-084781	Oryza rufipogon	24.91	3.00e-91	328.00
IUUC-Osa-086293	Oryza sativa	24.91	3.00e-91	328.00
IUUC-Ola-086881	Oryzias latipes	24.81	2.00e-76	278.00
IUUC-Olu-087674	Ostreococcus lucimarinus	25.28	7.00e-82	296.00
IUUC-Oga-089056	Otolemur garnettii	24.04	9.00e-78	283.00
IUUC-Oar-089457	Ovis aries	23.97	2.00e-74	272.00
IUUC-Ptr-091179	Pan troglodytes	24.05	5.00e-76	277.00
IUUC-Pan-092019	Papio anubis	24.02	1.00e-75	276.00
IUUC-Psi-093407	Pelodiscus sinensis	24.35	3.00e-74	271.00
IUUC-Pma-094272	Petromyzon marinus	24.69	2.00e-67	248.00
IUUC-Pno-094864	Phaeosphaeria nodorum	25.46	2.00e-82	298.00
IUUC-Ppa-095885	Physcomitrella patens	26.84	2.00e-95	342.00
IUUC-Pfo-096083	Poecilia formosa	24.85	6.00e-79	287.00
IUUC-Pab-098652	Pongo abelii	24.49	8.00e-68	250.00
IUUC-Pop-099593	Populus trichocarpa	25.65	2.00e-88	318.00
IUUC-Pca-100189	Procavia capensis	25.05	4.00e-39	154.00
IUUC-Ppe-101987	Prunus persica	25.42	1.00e-87	316.00
IUUC-Pva-102605	Pteropus vampyrus	24.15	2.00e-77	282.00
IUUC-Pgr-103659	Puccinia graminis	22.22	1.00e-20	94.00
IUUC-Ptt-103884	Puccinia triticina	22.08	2.00e-14	72.80
IUUC-Pte-104233	Pyrenophora teres	26.77	1.00e-95	342.00
IUUC-Pyt-104454	Pyrenophora triticirepentis	26.86	4.00e-93	334.00
IUUC-Rno-106004	Rattus norvegicus	24.11	6.00e-78	283.00
IUUC-Sha-106726	Sarcophilus harrisii	24.52	1.00e-69	256.00
IUUC-Spo-108029	Schizosaccharomyces pombe	37.57	0.00e+00	775.00
IUUC-Ssl-108441	Sclerotinia sclerotiorum	23.98	8.00e-65	240.00
IUUC-Smo-108808	Selaginella moellendorffii	26.09	2.00e-98	352.00
IUUC-Sit-109735	Setaria italica	24.54	8.00e-86	310.00
IUUC-Sly-111520	Solanum lycopersicum	25.42	2.00e-88	319.00
IUUC-Sar-113606	Sorex araneus	27.07	2.00e-09	56.20
IUUC-Sbi-114539	Sorghum bicolor	24.31	2.00e-82	299.00
IUUC-Sre-114936	Sporisorium reilianum	20.38	1.00e-18	87.80
IUUC-Ssc-116038	Sus scrofa	24.17	6.00e-77	280.00
IUUC-Tgu-117512	Taeniopygia guttata	24.36	1.00e-75	276.00
IUUC-Tru-117593	Takifugu rubripes	25.00	1.00e-75	276.00
IUUC-Tsy-119513	Tarsius syrichta	23.45	1.00e-34	139.00
IUUC-Tni-120551	Tetraodon nigroviridis	25.64	4.00e-40	157.00
IUUC-Tca-121505	Theobroma cacao	24.93	2.00e-85	308.00
IUUC-Tre-122136	Trichoderma reesei	24.56	2.00e-69	256.00
IUUC-Tvi-122512	Trichoderma virens	23.82	1.00e-70	259.00
IUUC-Tae-124186	Triticum aestivum	24.87	4.00e-87	314.00
IUUC-Tur-126451	Triticum urartu	25.12	8.00e-78	283.00
IUUC-Tme-127057	Tuber melanosporum	25.79	8.00e-78	283.00
IUUC-Ttr-128891	Tursiops truncatus	23.75	2.00e-44	172.00
IUUC-Uma-129583	Ustilago maydis	22.35	8.00e-15	74.70
IUUC-Vda-129870	Verticillium dahliae	24.66	1.00e-72	266.00
IUUC-Vpa-130117	Vicugna pacos	23.33	2.00e-48	186.00
IUUC-Vvi-131033	Vitis vinifera	25.89	4.00e-90	324.00
IUUC-Xtr-131987	Xenopus tropicalis	23.98	6.00e-74	270.00
IUUC-Xma-134117	Xiphophorus maculatus	25.04	8.00e-75	273.00
IUUC-Zma-134758	Zea mays	24.78	5.00e-89	320.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence