iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-100086

Ensembl Protein ID

POPTR_0012s07650.1

UniProt Accession

B9I345; B9I345_POPTR

Genbank Protein ID

EEE96233.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_570035; POPTR_0012s07650g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s07650	POPTR_0012s07650.1	POPTR_0012s07650.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-38	128.6	50	85
UBD/Beta-Prp	1.60e-75	255.1	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           H ++v++++f  s +l+vsG+dD +ikvW+++ +++
   Q: 50   HDGPVRGVHFhkSQPLFVSGGDDYKIKVWNYKLHRC 85
           99*********7559***************876666 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
           t +++++++++ + f+ ++++++++  +g i++wd+++g+l+ ++ +h+++v+ v f+++++++v+g++D+ ikvw+++   c+ tl gh 
   Q: 3    TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHL 93
           67889999*********************************************************************************** PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl................... 166
           d++++++f+ +  ++vs+s+d+tir+w++++++c++ +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                   
   Q: 94   DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkktvspaddimrltq 183
           ************************************.********************************************9999997777 PP
   S: 167  ........ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsir 247
                     + + + l+g h++ v++ +f+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D+sir
   Q: 184  mntdlfggVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273
           7777666444444444466.********************************777668********************************* PP
   S: 248  iWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
           +Wd+++++ ++t+ +++++++  a  +++ n l++g  ds   ++kl++++p
   Q: 274  VWDVTKRTGVQTFRREHDRFWILAS-HPEMNLLAAG-HDSGMIVFKLERERP 323
           ************************9.6666655555.689999999988765 PP

Organism

Populus trichocarpa

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHSK RPWILASLHS GVIQLWDYRM GTLIDRFDEH DGPVRGVHFH 60
KSQPLFVSGG DDYKIKVWNY KLHRCLFTLL GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAAAGAGAG AGCTCCAAAA CAAAGCAAGA CAAAACAGAA ACCCTCTCCC TCGATCTACC 60
TCCCTCTCCC TCTCCCTCTC CCTGTGAAAC AAAAGAAATC TACACTCTCA CTTAAATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011048--Haem_d1
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

pop:POPTR_0012s07650g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	79.36	0.00e+00	2008.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	72.36	0.00e+00	1284.00
IUUC-Csv-025864	Ciona savignyi	59.30	0.00e+00	1007.00
IUUC-Cme-027222	Cyanidioschyzon merolae	40.74	2.00e-146	513.00
IUUC-Dor-030290	Dipodomys ordii	54.48	1.00e-169	590.00
IUUC-Ete-032873	Echinops telfairi	61.43	0.00e+00	1068.00
IUUC-Lpe-051316	Leersia perrieri	79.75	0.00e+00	2027.00
IUUC-Loc-051867	Lepisosteus oculatus	51.05	0.00e+00	834.00
IUUC-Meu-056238	Macropus eugenii	58.35	0.00e+00	796.00
IUUC-Ncr-068892	Neurospora crassa	49.11	0.00e+00	1138.00
IUUC-Nle-069634	Nomascus leucogenys	67.56	0.00e+00	966.00
IUUC-Oba-075761	Oryza barthii	80.23	0.00e+00	2018.00
IUUC-Obr-076429	Oryza brachyantha	80.02	0.00e+00	2016.00
IUUC-Ogl-077364	Oryza glaberrima	80.49	0.00e+00	2028.00
IUUC-Ogu-078257	Oryza glumaepatula	80.45	0.00e+00	1968.00
IUUC-Oin-079274	Oryza indica	80.41	0.00e+00	2027.00
IUUC-Olo-080466	Oryza longistaminata	85.68	0.00e+00	1518.00
IUUC-Ome-081668	Oryza meridionalis	87.26	0.00e+00	1302.00
IUUC-Oni-082874	Oryza nivara	80.49	0.00e+00	2027.00
IUUC-Opu-083885	Oryza punctata	80.33	0.00e+00	2026.00
IUUC-Oru-084274	Oryza rufipogon	80.49	0.00e+00	2028.00
IUUC-Osa-085565	Oryza sativa	80.49	0.00e+00	2028.00
IUUC-Psi-093044	Pelodiscus sinensis	56.08	0.00e+00	906.00
IUUC-Pca-100413	Procavia capensis	62.41	0.00e+00	716.00
IUUC-Ptt-103978	Puccinia triticina	54.30	0.00e+00	818.00
IUUC-Sit-109697	Setaria italica	81.24	0.00e+00	2044.00
IUUC-Sbi-114388	Sorghum bicolor	80.92	0.00e+00	2038.00
IUUC-Tae-125527	Triticum aestivum	79.69	0.00e+00	2020.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence