iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113843

UUCD1 version

UUC-SoB-00059

Ensembl Protein ID

Sb01g039580.1

UniProt Accession

A0A1B6QP35; A0A1B6QP35_SORBI

Genbank Protein ID

KXG39681.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G420500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g039580	Sb01g039580.1	Sb01g039580.1
Sb01g039580	Sb01g039580.2	Sb01g039580.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.30e-32	111.2	292	364

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIsl+lM+dPv++++G+ty+r +Ie wl+ g+ tcP+t+q+l++++l+Pn++lr+li +wce+n++
   Q: 292  IPDDFRCPISLDLMSDPVIVATGQTYERGYIEMWLEAGHDTCPKTQQKLANKSLTPNYVLRSLITQWCEANGI 364
           89********************************************************************986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDDEAAKSVP TSDMNTDAAA EAEAAAAPLR PSSSEAAERE AKVEGADEEG QVVERLVELV 60
SEIATISDFR NSYRRQFCNL SRRIRLLVPM LEEAKEAPAP LPAASEAALR RLRDALHAAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGGCCGCCT CTCTCGCCCA TAGTTCTGCA CTTCTGCTCC AAATCCCCTC CCCTCCCCCT 60
CCATCCCCCC GCGGCGGTCT CCGGCCACCG TGCTGCGCGC AGGACGAGCC CCGAGCCTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001147	Aegilops tauschii	84.79	0.00e+00	875.00
IUUC-Aly-005681	Arabidopsis lyrata	57.70	0.00e+00	700.00
IUUC-Ath-007618	Arabidopsis thaliana	57.39	0.00e+00	697.00
IUUC-Bdi-014772	Brachypodium distachyon	83.81	0.00e+00	996.00
IUUC-Bol-015254	Brassica oleracea	56.96	0.00e+00	685.00
IUUC-Bra-017857	Brassica rapa	56.67	0.00e+00	675.00
IUUC-Gma-043064	Glycine max	62.79	0.00e+00	787.00
IUUC-Hvu-047052	Hordeum vulgare	83.65	0.00e+00	857.00
IUUC-Lpe-051284	Leersia perrieri	83.95	0.00e+00	981.00
IUUC-Mtr-058332	Medicago truncatula	62.50	0.00e+00	781.00
IUUC-Mac-065438	Musa acuminata	62.25	0.00e+00	767.00
IUUC-Oba-075184	Oryza barthii	83.03	0.00e+00	1000.00
IUUC-Obr-076590	Oryza brachyantha	79.08	0.00e+00	995.00
IUUC-Ogl-077386	Oryza glaberrima	83.03	0.00e+00	1000.00
IUUC-Ogu-078326	Oryza glumaepatula	83.86	0.00e+00	1004.00
IUUC-Oin-079687	Oryza indica	83.03	0.00e+00	1000.00
IUUC-Olo-081001	Oryza longistaminata	83.20	0.00e+00	1003.00
IUUC-Ome-081417	Oryza meridionalis	79.17	0.00e+00	1018.00
IUUC-Oni-082379	Oryza nivara	82.87	0.00e+00	996.00
IUUC-Opu-083774	Oryza punctata	79.02	0.00e+00	1009.00
IUUC-Oru-084885	Oryza rufipogon	83.03	0.00e+00	1001.00
IUUC-Osa-085946	Oryza sativa	82.70	0.00e+00	993.00
IUUC-Pop-098809	Populus trichocarpa	64.15	0.00e+00	811.00
IUUC-Ppe-102057	Prunus persica	66.91	0.00e+00	713.00
IUUC-Smo-109443	Selaginella moellendorffii	50.85	6.00e-156	543.00
IUUC-Sit-110369	Setaria italica	92.06	0.00e+00	938.00
IUUC-Sly-111594	Solanum lycopersicum	62.93	0.00e+00	772.00
IUUC-Stu-112876	Solanum tuberosum	61.83	0.00e+00	763.00
IUUC-Tca-121745	Theobroma cacao	61.84	0.00e+00	778.00
IUUC-Tae-123188	Triticum aestivum	83.76	0.00e+00	974.00
IUUC-Tur-126457	Triticum urartu	80.23	0.00e+00	890.00
IUUC-Vvi-131752	Vitis vinifera	63.98	0.00e+00	775.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence