iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114464

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G008100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g000870	Sb03g000870.1	Sb03g000870.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.00e-26	92.7	415	487
E3 adaptor/Cullin RING/DCX/DWD	3.30e-12	46.9	1158	1193

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p++f+CpI+ +++ dPv+l++G+ty+r++I++wl++g++tcP+trq+l+  +l + n++l+rli aw +++ 
   Q: 415  TPKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNSTCPITRQRLHGAQLpKTNYVLKRLIGAWWDQQP 487
           699*****************************************************************99875 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           Ht  +t+l+   s+  l sGs D +i+vW +r+gvl
   Q: 1158 HTKAITSLSVlqSEEKLFSGSLDRSIRVWQFRDGVL 1193
           9999*****7776699*****************997 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAGPTPTYSA IVSHTAAFLA ELIADPLLRR HLLSAAAAAD GQQHPAATLQ ALSLVSDALD 60
TAASGSPSPS PSSLRAAERL LRSLPAATPL SCLLLALARA ARRGGGAAAA AAVLDLFALD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGGAC CGACGCCGAC CTACTCCGCG ATCGTGTCCC ACACCGCCGC CTTCCTCGCG 60
GAGCTCATCG CCGACCCGCT CCTGCGTCGT CACCTCCTCT CGGCGGCGGC GGCCGCGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_03g000870

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	75.82	0.00e+00	1411.00
IUUC-Atr-002936	Amborella trichopoda	47.83	0.00e+00	810.00
IUUC-Bdi-014680	Brachypodium distachyon	71.42	0.00e+00	1628.00
IUUC-Gma-044085	Glycine max	43.62	0.00e+00	1012.00
IUUC-Hvu-047711	Hordeum vulgare	70.94	4.00e-154	536.00
IUUC-Lpe-051224	Leersia perrieri	66.21	0.00e+00	1316.00
IUUC-Mtr-058452	Medicago truncatula	43.18	0.00e+00	975.00
IUUC-Mac-064685	Musa acuminata	58.41	0.00e+00	1120.00
IUUC-Obr-076347	Oryza brachyantha	66.46	0.00e+00	1436.00
IUUC-Ogl-077695	Oryza glaberrima	72.11	0.00e+00	1414.00
IUUC-Ogu-078873	Oryza glumaepatula	71.23	0.00e+00	1414.00
IUUC-Oin-079745	Oryza indica	79.37	0.00e+00	734.00
IUUC-Olo-081050	Oryza longistaminata	70.20	0.00e+00	681.00
IUUC-Ome-081604	Oryza meridionalis	70.79	0.00e+00	1405.00
IUUC-Oni-082155	Oryza nivara	70.28	0.00e+00	1437.00
IUUC-Opu-083775	Oryza punctata	65.62	0.00e+00	1215.00
IUUC-Oru-084628	Oryza rufipogon	68.09	0.00e+00	1368.00
IUUC-Osa-086224	Oryza sativa	70.94	1.00e-130	459.00
IUUC-Pop-099122	Populus trichocarpa	48.35	0.00e+00	778.00
IUUC-Ppe-101249	Prunus persica	51.27	0.00e+00	898.00
IUUC-Smo-109571	Selaginella moellendorffii	33.17	3.00e-139	488.00
IUUC-Sit-110152	Setaria italica	81.85	0.00e+00	1533.00
IUUC-Sly-111919	Solanum lycopersicum	48.75	0.00e+00	938.00
IUUC-Stu-111946	Solanum tuberosum	41.76	0.00e+00	1007.00
IUUC-Tca-121369	Theobroma cacao	46.09	0.00e+00	1130.00
IUUC-Tae-123295	Triticum aestivum	72.50	0.00e+00	1627.00
IUUC-Tur-126163	Triticum urartu	75.87	0.00e+00	1160.00
IUUC-Vvi-131144	Vitis vinifera	54.17	0.00e+00	1053.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence