iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111919

Ensembl Protein ID

Solyc07g020870.1.1

UniProt Accession

K4CCU7; K4CCU7_SOLLC

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc07g020870.1	Solyc07g020870.1.1	Solyc07g020870.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.60e-25	88.6	180	253
E3 adaptor/Cullin RING/DCX/DWD	3.30e-10	40.6	870	904

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceenss 74
           +p++f+CpI+  + ++Pv+l+sG+ty+r++I++wl++g+ tcP+trq+l+ ++l + n++l+rli +w e+ ++
   Q: 180  PPKDFVCPITTHVLEEPVTLESGQTYERKAIQEWLERGNVTCPITRQKLHRTQLpKTNYVLKRLIASWQEKDQN 253
           79******************************************************************998765 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           H   vt+l    s+  l sGs D t++vW++ +  
   Q: 870  HLKAVTSLVVlqSGEKLYSGSLDRTVRVWSIQDEG 904
           7778999865666699*************987765 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MTESILRHTS VFLSEILAHS EMPLLSEPTK SLSTMSREQA SQLKDLENEY EEILDENCKP 60
IWTDSVERDK SVMKLNRSSK EFSKFLSFYP QRVSLKALRS QRSSIKSKPS NFDLEHESCS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACAGAGA GCATTCTCCG CCACACCAGC GTGTTCTTAT CTGAAATCCT TGCGCATTCT 60
GAGGTCCGTC ACCGTCTATT CTCACTCTTT CATTAATCTG CTGATCAATG TGTTGTAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	49.39	0.00e+00	879.00
IUUC-Atr-002936	Amborella trichopoda	50.34	0.00e+00	842.00
IUUC-Bdi-014680	Brachypodium distachyon	48.59	0.00e+00	889.00
IUUC-Gma-044085	Glycine max	55.46	0.00e+00	1144.00
IUUC-Hvu-047711	Hordeum vulgare	48.10	7.00e-96	343.00
IUUC-Lpe-051224	Leersia perrieri	47.96	0.00e+00	745.00
IUUC-Mtr-058452	Medicago truncatula	57.09	0.00e+00	1170.00
IUUC-Mac-064685	Musa acuminata	56.59	0.00e+00	1024.00
IUUC-Obr-076347	Oryza brachyantha	50.00	0.00e+00	860.00
IUUC-Oin-079745	Oryza indica	50.70	7.00e-110	390.00
IUUC-Olo-081050	Oryza longistaminata	47.88	5.00e-126	444.00
IUUC-Ome-081604	Oryza meridionalis	48.87	0.00e+00	793.00
IUUC-Oni-082155	Oryza nivara	48.82	0.00e+00	762.00
IUUC-Opu-083775	Oryza punctata	45.48	0.00e+00	704.00
IUUC-Oru-084628	Oryza rufipogon	47.36	0.00e+00	749.00
IUUC-Osa-086224	Oryza sativa	47.33	4.00e-78	284.00
IUUC-Pop-099122	Populus trichocarpa	59.90	0.00e+00	903.00
IUUC-Ppe-101249	Prunus persica	63.15	0.00e+00	1079.00
IUUC-Sit-110152	Setaria italica	51.61	0.00e+00	925.00
IUUC-Stu-111946	Solanum tuberosum	88.63	0.00e+00	1934.00
IUUC-Sbi-114464	Sorghum bicolor	50.00	0.00e+00	803.00
IUUC-Tca-121369	Theobroma cacao	56.83	0.00e+00	1200.00
IUUC-Tae-123295	Triticum aestivum	50.10	0.00e+00	897.00
IUUC-Tur-126163	Triticum urartu	47.20	0.00e+00	721.00
IUUC-Vvi-131144	Vitis vinifera	59.88	0.00e+00	1261.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence