iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095350

Ensembl Protein ID

PP1S206_25V6.2

UniProt Accession

A9TCV9; A9TCV9_PHYPA

Genbank Protein ID

EDQ58745.1

Protein Name

Nucleosome remodeling factor, p48 subunit

Genbank Nucleotide ID

DS545095

Gene Name

NFC1502; PHYPADRAFT_91106

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S206_25V6	PP1S206_25V6.2	PP1S206_25V6.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-28	98.0	281	311

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H+++ +c+++  +d +l+++Gs D++++++D
   Q: 281  HNADLHCVDWnaHDeNLILTGSADNSVRLFD 311
           999*********888**************** PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MKKVPEDRYA QWKLLVPALY DWLTNHHLMW PSLSCRWGPQ LEAGSSKTRQ LLFYSERTDG 60
ECPNTIVVAQ CDIMKPRTAA AEQISQFKEG GKSPHLKKLK TIIHPGEVNR IREIPQNSNI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGGAAGTAA ACAAGCAGCT CTGCGATTTG CGCTGGAGTC ACGGATGCTC GCCCTTTCTC 60
ACGATTGCAA TCTCGAACGC TCACTCAACG TCATTCAGCT GAATCGTGTA AGGTTTTTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

ppp:PHYPADRAFT_91106

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000914	Aegilops tauschii	59.23	2.00e-145	508.00
IUUC-Atr-003045	Amborella trichopoda	64.99	4.00e-162	563.00
IUUC-Aly-006131	Arabidopsis lyrata	63.53	4.00e-177	613.00
IUUC-Ath-007494	Arabidopsis thaliana	63.53	4.00e-177	613.00
IUUC-Bdi-014938	Brachypodium distachyon	62.42	6.00e-168	582.00
IUUC-Bol-015960	Brassica oleracea	63.09	1.00e-176	612.00
IUUC-Bra-017393	Brassica rapa	63.31	3.00e-177	613.00
IUUC-Cme-027213	Cyanidioschyzon merolae	32.02	7.00e-38	152.00
IUUC-Gma-042982	Glycine max	64.43	3.00e-179	620.00
IUUC-Hvu-047149	Hordeum vulgare	63.19	1.00e-43	167.00
IUUC-Lpe-051595	Leersia perrieri	57.58	2.00e-137	481.00
IUUC-Mtr-057993	Medicago truncatula	63.31	2.00e-177	614.00
IUUC-Mac-065523	Musa acuminata	63.82	1.00e-142	498.00
IUUC-Oba-075959	Oryza barthii	58.77	8.00e-145	506.00
IUUC-Obr-076021	Oryza brachyantha	62.06	5.00e-163	566.00
IUUC-Ogl-077211	Oryza glaberrima	62.94	1.00e-163	568.00
IUUC-Ogu-078314	Oryza glumaepatula	55.70	3.00e-131	461.00
IUUC-Oin-079269	Oryza indica	63.98	8.00e-166	575.00
IUUC-Olo-080631	Oryza longistaminata	54.14	3.00e-140	491.00
IUUC-Oni-082416	Oryza nivara	60.09	1.00e-149	521.00
IUUC-Opu-083571	Oryza punctata	55.41	5.00e-135	473.00
IUUC-Oru-084902	Oryza rufipogon	59.87	2.00e-148	518.00
IUUC-Osa-085579	Oryza sativa	63.98	8.00e-166	575.00
IUUC-Olu-087795	Ostreococcus lucimarinus	38.65	3.00e-80	291.00
IUUC-Pop-099098	Populus trichocarpa	64.32	1.00e-170	591.00
IUUC-Ppe-101724	Prunus persica	64.90	2.00e-173	600.00
IUUC-Sit-110597	Setaria italica	61.74	2.00e-160	558.00
IUUC-Sly-111411	Solanum lycopersicum	62.42	4.00e-166	577.00
IUUC-Stu-112285	Solanum tuberosum	61.26	2.00e-125	441.00
IUUC-Sbi-114341	Sorghum bicolor	62.64	2.00e-161	561.00
IUUC-Tca-121523	Theobroma cacao	64.59	3.00e-171	593.00
IUUC-Tae-125672	Triticum aestivum	60.69	3.00e-162	563.00
IUUC-Tur-126763	Triticum urartu	59.00	1.00e-143	502.00
IUUC-Vvi-131642	Vitis vinifera	62.86	7.00e-164	569.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence