iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017265

Ensembl Protein ID

Bra031445.1-P

UniProt Accession

M4ERL9; M4ERL9_BRARP

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra031445	Bra031445.1	Bra031445.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-34	116.6	140	178
UBD/Beta-Prp	2.60e-56	192.0	12	251

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + +v+G+ D+ +kvWDl+ g+l++
   Q: 140  GHTRDINTIKFsPDgRWVVTGGLDNAVKVWDLTAGKLIH 178
           8***********99999******************9876 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsls 101
            +h++ ++c+ + ++ ++ll+tg++d ++ +w + +++ l sl gh+++v ++ f++ + + + g++ ++ik+wdl+  k+v++++gh +s  +++
   Q: 12   LAHSANVNCLSIgKKTSRLLITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSLAFDSAEVLVLGGASSGLIKLWDLEEAKMVRAFTGHRSSCSAVE 107
           57899999999999********************************************9888999999**************************** PP
   S: 102  fspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvs 197
           f+p g++l+sGs+d  +++wd++++ c++ t +gh++ +n+++++pdg+ +v+G+lD++v++Wdl  gkl+++++  h++s++sl+f++  + l++
   Q: 108  FHPFGEFLASGSNDTNLKIWDIRKKGCIQ-TYKGHTRDINTIKFSPDGRWVVTGGLDNAVKVWDLTAGKLIHDFKF-HEGSIRSLDFHPLEFLLAT 201
           *****************************.*********************************************9.******************* PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           gs d+tvk+wdl+t e + + +  ++ v+s++f+p++  l +g +Dg +++
   Q: 202  GSADRTVKFWDLETFELIGSTRPEDTGVRSIKFHPDGRTLFCGLDDG-LKV 251
           *************************************9999997665.444 PP

Organism

Brassica rapa

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LITGGDDYKV NLWAIGKPTS LMSLCGHTSA 60
VDSLAFDSAE VLVLGGASSG LIKLWDLEEA KMVRAFTGHR SSCSAVEFHP FGEFLASGSN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCAAGC GTGGATATAA GCTGCGTATC CTTAATACTT TTCTTTATGG CCATTTTTTT 60
TATATTTTAA GATGGATAAA TAAAATTGAA TAAAGAATAG ATTTTAGCTC CAAAGAACCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	59.88	5.00e-124	438.00
IUUC-Aly-005897	Arabidopsis lyrata	61.97	0.00e+00	1286.00
IUUC-Ath-006624	Arabidopsis thaliana	75.27	0.00e+00	1665.00
IUUC-Bdi-014531	Brachypodium distachyon	66.96	2.00e-146	512.00
IUUC-Bol-015355	Brassica oleracea	96.97	0.00e+00	2119.00
IUUC-Cin-025156	Ciona intestinalis	44.59	1.00e-83	304.00
IUUC-Hvu-047729	Hordeum vulgare	66.95	1.00e-146	513.00
IUUC-Mtr-057706	Medicago truncatula	64.22	2.00e-173	602.00
IUUC-Mac-065245	Musa acuminata	63.29	4.00e-152	531.00
IUUC-Ogl-077401	Oryza glaberrima	68.68	7.00e-150	524.00
IUUC-Ogu-078062	Oryza glumaepatula	64.89	7.00e-147	514.00
IUUC-Oin-080042	Oryza indica	64.89	5.00e-147	514.00
IUUC-Osa-085801	Oryza sativa	68.68	8.00e-150	524.00
IUUC-Pop-100006	Populus trichocarpa	55.39	0.00e+00	674.00
IUUC-Ppe-101697	Prunus persica	60.04	3.00e-180	625.00
IUUC-Sly-111901	Solanum lycopersicum	58.30	5.00e-170	591.00
IUUC-Sbi-114389	Sorghum bicolor	69.05	6.00e-146	511.00
IUUC-Tca-121590	Theobroma cacao	65.79	0.00e+00	704.00
IUUC-Tur-126181	Triticum urartu	66.28	3.00e-145	509.00
IUUC-Tme-127031	Tuber melanosporum	33.06	8.00e-29	121.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence