iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oni-082473

Ensembl Protein ID

ONIVA01G37440.1

UniProt Accession

A0A0E0FTZ6; A0A0E0FTZ6_ORYNI

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ONIVA01G37440	ONIVA01G37440.1	ONIVA01G37440.1
ONIVA01G37440	ONIVA01G37440.2	ONIVA01G37440.2
ONIVA01G37440	ONIVA01G37440.3	ONIVA01G37440.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-35	119.6	169	207
UBD/Beta-Prp	1.30e-57	196.4	37	210

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + ++ ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 169  GHRGAIRTIRFtPDgRWVVTGGEDNIVKVWDLTAGKLLH 207
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
           +  + +h+++v+sls+ + s+ ++++G++dr +++w + +++ l   lsgh+g+v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h
   Q: 37   LEEFVAHDAEVRSLSIGKkSSRVFITGGSDRKVNLWAIGKQTPLL-SLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-H 128
           556779************666************************.*********************************************9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlq 261
            +s +s++f++ g++++sgs d+++k+wd++++ c++t++gh+  ++ +rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++
   Q: 129  RSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFK 210
           ******************************************************************************9887 PP

Organism

Oryza nivara

Functional Description
(View)

Probably involved in membrane trafficking.

Protein Sequence
(Fasta)

MDPEKRGYRL PVEAVTGYFL EACIAQVYNS LTWKPKLEEF VAHDAEVRSL SIGKKSSRVF 60
ITGGSDRKVN LWAIGKQTPL LSLSGHTGSV EAVEFDTAEV LVLAGSSNGS IKLWDLEEAK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTATTTCAT TCTCAAGGAA CGCGAGAGAA GAGAACCTTA CTTTAGCCAG CTCTGGTACA 60
AAAGAAAAGA AACGAGAACA AAAGCGAAGC AAAGGGAGGC GAAGGGGGAG AAAGGGAGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-1003--Cell membrane
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0472--Membrane
KW-0493--Microtubule
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR007273--SCAMP
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF04144--SCAMP
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0005886--C:plasma membrane
GO:0030658--C:transport vesicle membrane
GO:0051013--P:microtubule severing
GO:0015031--P:protein transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	70.08	0.00e+00	1164.00
IUUC-Bdi-014531	Brachypodium distachyon	76.85	0.00e+00	1280.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.60	9.00e-23	101.00
IUUC-Gma-043341	Glycine max	44.33	0.00e+00	644.00
IUUC-Hvu-047729	Hordeum vulgare	73.26	0.00e+00	937.00
IUUC-Mac-065245	Musa acuminata	55.40	1.00e-180	626.00
IUUC-Oba-075016	Oryza barthii	98.03	0.00e+00	1441.00
IUUC-Obr-076138	Oryza brachyantha	85.76	0.00e+00	1471.00
IUUC-Ogl-077401	Oryza glaberrima	93.52	0.00e+00	1577.00
IUUC-Ogu-078062	Oryza glumaepatula	99.64	0.00e+00	1694.00
IUUC-Oin-080042	Oryza indica	99.52	0.00e+00	1689.00
IUUC-Olo-080713	Oryza longistaminata	97.84	0.00e+00	1422.00
IUUC-Ome-081192	Oryza meridionalis	96.67	0.00e+00	1373.00
IUUC-Opu-083293	Oryza punctata	89.96	0.00e+00	1456.00
IUUC-Oru-085183	Oryza rufipogon	99.52	0.00e+00	1692.00
IUUC-Osa-085801	Oryza sativa	93.63	0.00e+00	1576.00
IUUC-Sit-110364	Setaria italica	74.91	0.00e+00	1202.00
IUUC-Sbi-114389	Sorghum bicolor	67.82	0.00e+00	1127.00
IUUC-Tae-125511	Triticum aestivum	73.47	0.00e+00	1224.00
IUUC-Tur-126181	Triticum urartu	74.26	0.00e+00	1224.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence