iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099505

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_803522; POPTR_0008s11210g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s11210	POPTR_0008s11210.1	POPTR_0008s11210.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.30e-23	82.6	161	236

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 3    peeflCpIslelMrdPvvlpsGitydrssIekwlasggk....tcPvtrqplteedlvPnltlrrliqawceenss 74
           ++ f Cp+++++M dPv+l+sG+tydr++I +wl+++ +     cP+t+q+l ++ l+ n +l+ +i++w e+n++
   Q: 161  YQTFYCPLTKQIMDDPVTLQSGVTYDRKAITEWLEESDNsqgiFCPTTGQKLLSRVLKTNVALKTTIEEWKERNEV 236
           789*******************************554444666*****************************9976 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MELQKAEYTT NNATEILQSL SRSITEAKDL VNKCQRGTIS NSESELKSNM SHLERVIKEM 60
GACLTLIPSS TFQGQEYAEV SVQALSNEML SAHFEVGQSQ GLQTKELDPH KNFSEEGRNE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGTTGC AGAAAGCTGA GTACACCACG AATAATGCAA CAGAAATCCT TCAATCCCTA 60
TCCAGAAGCA TCACCGAGGC CAAGGATCTT GTAAACAAAT GCCAAAGAGG CACCATCTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR000357--HEAT
IPR021133--HEAT_type_2
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS50077--HEAT_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF02985--HEAT
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0008s11210g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000318	Aegilops tauschii	39.58	0.00e+00	664.00
IUUC-Aly-006424	Arabidopsis lyrata	59.53	0.00e+00	954.00
IUUC-Bol-016179	Brassica oleracea	57.57	0.00e+00	899.00
IUUC-Bra-017617	Brassica rapa	57.93	0.00e+00	892.00
IUUC-Obr-076391	Oryza brachyantha	39.92	0.00e+00	637.00
IUUC-Oin-079369	Oryza indica	42.84	0.00e+00	718.00
IUUC-Osa-086255	Oryza sativa	42.00	0.00e+00	738.00
IUUC-Sly-111047	Solanum lycopersicum	53.75	0.00e+00	999.00
IUUC-Stu-112113	Solanum tuberosum	53.65	0.00e+00	1006.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence