iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111353

Ensembl Protein ID

Solyc07g065950.2.1

UniProt Accession

K4CHS1; K4CHS1_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc07g065950.2	Solyc07g065950.2.1	Solyc07g065950.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-12	47.6	389	419

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl...af.sdtllvsGsdDgtikvWD 29
           H ++vt+l   ++ + t+lvs+s Dgtik+WD
   Q: 389  HDGEVTDLsmcQWmT-TRLVSASVDGTIKIWD 419
           999999973325655.99************** PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MASSPGNPNQ PGGTGSGPFD IHKFFKPSTP TNPNPQNPII SSHYPSPNAS YPPPTPGAGA 60
GVGGVYPYQT QTTTPFRHHP QFTHNLPQYS TPHDTQLMHQ QRSMSFPTPP LQPPPPTSSP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGCGGCTCT GCTCCCAAGT CTGCATCTTT CTCTCTTCAG TCGGATCTCA AAGGTATCCA 60
TAAACCGATC CATCTTCTTC TTCTTCAACG ATTCAATCCA AATCCCTAAT TTTCTCTGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA

KEGG

sly:101268011

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002815	Amborella trichopoda	50.52	0.00e+00	1222.00
IUUC-Ath-006603	Arabidopsis thaliana	55.60	0.00e+00	1233.00
IUUC-Bra-017673	Brassica rapa	52.89	0.00e+00	1153.00
IUUC-Gma-044374	Glycine max	62.93	0.00e+00	1387.00
IUUC-Lpe-051585	Leersia perrieri	51.06	0.00e+00	1030.00
IUUC-Mtr-057751	Medicago truncatula	61.08	0.00e+00	1308.00
IUUC-Mac-064436	Musa acuminata	53.44	0.00e+00	1181.00
IUUC-Oba-075696	Oryza barthii	45.44	0.00e+00	682.00
IUUC-Obr-076430	Oryza brachyantha	50.20	0.00e+00	1053.00
IUUC-Ogl-077350	Oryza glaberrima	50.65	0.00e+00	1048.00
IUUC-Oin-079418	Oryza indica	50.50	0.00e+00	1013.00
IUUC-Olo-080844	Oryza longistaminata	47.48	0.00e+00	941.00
IUUC-Ome-081610	Oryza meridionalis	69.81	7.00e-179	620.00
IUUC-Oni-082323	Oryza nivara	50.53	0.00e+00	1033.00
IUUC-Opu-084175	Oryza punctata	50.24	0.00e+00	1039.00
IUUC-Oru-084677	Oryza rufipogon	50.57	0.00e+00	1038.00
IUUC-Osa-085798	Oryza sativa	50.77	0.00e+00	1053.00
IUUC-Ppa-095912	Physcomitrella patens	56.37	1.00e-134	474.00
IUUC-Pop-100004	Populus trichocarpa	60.58	0.00e+00	1330.00
IUUC-Ppe-101310	Prunus persica	63.58	0.00e+00	1275.00
IUUC-Sit-110590	Setaria italica	49.11	0.00e+00	1101.00
IUUC-Sbi-114653	Sorghum bicolor	49.39	0.00e+00	1062.00
IUUC-Tae-125636	Triticum aestivum	48.36	0.00e+00	1099.00
IUUC-Tur-126244	Triticum urartu	45.84	0.00e+00	988.00
IUUC-Vvi-130965	Vitis vinifera	65.70	0.00e+00	1544.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence