iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006886

UUCD1 version

UUC-ArT-00611

Ensembl Protein ID

AT1G76410.1

UniProt Accession

Q8LC69; Q9S783; ATL8_ARATH

Genbank Protein ID

AAF16660.1; AAG51946.1; AEE35838.1; BAC43477.1; AAO63979.1; AAM63811.1

Protein Name

RING-H2 finger protein ATL8; RING-type E3 ubiquitin transferase ATL8

Genbank Nucleotide ID

AC012394; AC015450; CP002684; AK118893; BT005559; AY086760

Gene Name

ATL8; At1g76410; F14G6.1; F15M4.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G76410	AT1G76410.1	AT1G76410.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.30e-09	38.0	104	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl++f   d+++vlp CgH fh +C+  w         + +CP Cr
   Q: 104  CAICLTEFaaGDELRVLPqCGHGFHVSCIDTW------LGSHSSCPSCR 146
           ********88555*******************......99********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MARLLFRLLQ EANSTSPAEA SPPFNSDLVL ILAVLLCALT CIIGLIAVSR CAWLRRIASR 60
NRSDQTHPPP VAAANKGLKK KVLRSLPKLT YSPDSPPAEK LVECAICLTE FAAGDELRVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGCTTTCGA GTTTTCAGTC ATTAACTAAA TGCAACCGAT TTCGAACTAA TAACAATTGA 60
AATTTTACGA AAACATCCTT ATAACTGAAA GTGATACAAT AAACTTTATA ATATAAAGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G76410

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005492	Arabidopsis lyrata	94.57	3.00e-83	300.00
IUUC-Bol-015898	Brassica oleracea	79.89	8.00e-65	238.00
IUUC-Bra-017625	Brassica rapa	79.89	9.00e-61	225.00
IUUC-Mtr-057800	Medicago truncatula	63.64	5.00e-42	163.00
IUUC-Opu-083456	Oryza punctata	60.27	2.00e-22	98.20
IUUC-Pop-098856	Populus trichocarpa	59.00	2.00e-46	177.00
IUUC-Sit-110757	Setaria italica	58.24	4.00e-26	110.00
IUUC-Sly-111851	Solanum lycopersicum	72.22	4.00e-42	162.00
IUUC-Stu-112165	Solanum tuberosum	71.30	2.00e-41	160.00
IUUC-Sbi-113838	Sorghum bicolor	54.14	3.00e-28	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence