iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017736

Ensembl Protein ID

Bra029953.1-P

UniProt Accession

M4EMD3; M4EMD3_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra029953	Bra029953.1	Bra029953.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-12	47.0	322	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.......sd..tllvsGsdDgtikvW 28
           H+++v+ +++       s+   llv+Gs Dg++k+W
   Q: 322  HSSWVSTMSWgisgcdsSNpqMLLVTGSCDGSVKIW 357
           **************9984444669************ PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIILN PALPSGPRGV ISVPNAEPYQ 60
IGKVRYEDLL SGGLLPSSLK RERHPSVRSL SWSHLGMSQN YGCLLAVCSA EGRVKLYRPP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGTCGC GGTTCCAGGA GGCGTCACTG GTTACTTCGC CATCGTACCC TAACGCCGTC 60
GCTTGGTCAT CGGAAAATCT GATCGCCGTC GCCGCTGGCC ACCTCGTCAT CATCCTCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR024761--TFIIIC_delta_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12657--TFIIIC_delta
PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003046	Amborella trichopoda	41.13	5.00e-99	355.00
IUUC-Aly-005715	Arabidopsis lyrata	81.14	0.00e+00	1321.00
IUUC-Ath-007637	Arabidopsis thaliana	80.47	0.00e+00	1360.00
IUUC-Bdi-014902	Brachypodium distachyon	38.73	2.00e-156	546.00
IUUC-Bol-016169	Brassica oleracea	95.69	0.00e+00	1279.00
IUUC-Gma-044065	Glycine max	44.52	0.00e+00	677.00
IUUC-Mtr-057870	Medicago truncatula	42.76	0.00e+00	687.00
IUUC-Mac-065235	Musa acuminata	45.97	9.00e-95	341.00
IUUC-Ogl-077286	Oryza glaberrima	36.14	3.00e-153	535.00
IUUC-Oin-079863	Oryza indica	37.39	6.00e-117	415.00
IUUC-Oru-084242	Oryza rufipogon	35.29	2.00e-103	370.00
IUUC-Osa-085660	Oryza sativa	37.54	4.00e-117	415.00
IUUC-Ppa-095823	Physcomitrella patens	34.11	1.00e-87	317.00
IUUC-Pop-098900	Populus trichocarpa	47.68	0.00e+00	820.00
IUUC-Ppe-101763	Prunus persica	48.55	0.00e+00	762.00
IUUC-Smo-108757	Selaginella moellendorffii	32.23	6.00e-73	268.00
IUUC-Sit-110507	Setaria italica	39.87	3.00e-163	568.00
IUUC-Sly-111401	Solanum lycopersicum	44.82	2.00e-141	495.00
IUUC-Stu-112879	Solanum tuberosum	42.77	3.00e-107	382.00
IUUC-Tca-121440	Theobroma cacao	49.25	0.00e+00	812.00
IUUC-Tae-124422	Triticum aestivum	39.07	2.00e-160	559.00
IUUC-Vvi-131537	Vitis vinifera	51.30	4.00e-160	558.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence