iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099959

Ensembl Protein ID

POPTR_0018s06840.1

UniProt Accession

B9N5H1; B9N5H1_POPTR

Genbank Protein ID

ERP49772.1

Protein Name

WD-40 repeat protein MSI4

Genbank Nucleotide ID

CM000354

Gene Name

POPTR_0018s06840g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s06840	POPTR_0018s06840.1	POPTR_0018s06840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-25	87.1	293	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H+++ +c+++  +d +l+++Gs D ++ ++D
   Q: 293  HNADLHCVDWnpQDdNLILTGSADTSVCMFD 323
           999********9555***************9 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKEGRKAQQP SIDDKYTQWK SLVPVLYDWL ANHNLVWPSL SCRWGPQLEQ ATYKNRQRLY 60
LSEQANFTDG SVPNTLVIAN CDVVKSRVAA AEHISQFNEE ARSPFVKKYK TIIHPGEVNR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAAGAGG GAAGGAAGGC ACAGCAACCC TCTATTGATG ACAAGTACAC TCAGTGGAAG 60
TCTTTGGTTC CTGTTCTTTA TGACTGGCTA GCCAATCACA ACCTCGTCTG GCCATCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

pop:POPTR_0018s06840g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-044151	Glycine max	88.07	0.00e+00	845.00
IUUC-Hvu-047149	Hordeum vulgare	76.71	5.00e-57	212.00
IUUC-Oba-075959	Oryza barthii	69.33	0.00e+00	627.00
IUUC-Ogu-078314	Oryza glumaepatula	65.34	3.00e-165	574.00
IUUC-Oni-082416	Oryza nivara	71.43	0.00e+00	653.00
IUUC-Olu-087795	Ostreococcus lucimarinus	39.87	6.00e-85	307.00
IUUC-Ppe-101724	Prunus persica	89.78	0.00e+00	834.00
IUUC-Sit-110597	Setaria italica	76.39	0.00e+00	712.00
IUUC-Sly-111411	Solanum lycopersicum	78.70	0.00e+00	727.00
IUUC-Tca-121523	Theobroma cacao	90.36	0.00e+00	860.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence