iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099130

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000350

Gene Name

POPTRDRAFT_896770; POPTR_0014s08670g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0014s08670	POPTR_0014s08670.1	POPTR_0014s08670.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.80e-06	28.1	135	177

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlp....CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+++kd +  l+    C H fh+ Cl +w       + + +CP+Cr
   Q: 135  CSICLCEYKD-LEMLRmmpdCRHYFHLLCLDAW------LKLNGSCPVCR 177
           ********88.666556669*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSTPTTTIPS TISATSPPPP ANYLTNLGLG YSIAIALFFL VLLSTILLAS YICCRTNRHR 60
SRNSNNNNNN YANSTADGII LPRIIFVAED DEEQERDLES AAVGLNQAVI NSYPKFQFSK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTCAACAC AGAGCCAGTA CTCATGAATC TCCACTAGGA AGAAAAGAAA AGAAAAAAAA 60
CCCTAATTTC CTAGCAAAAG CAAGGCCCGA AGCCCATGAT TTTCCCACTT CACACGTACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0014s08670g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000942	Aegilops tauschii	71.62	2.00e-22	95.90
IUUC-Atr-002663	Amborella trichopoda	60.90	6.00e-35	139.00
IUUC-Aly-005626	Arabidopsis lyrata	62.31	2.00e-51	194.00
IUUC-Ath-007050	Arabidopsis thaliana	63.45	1.00e-52	198.00
IUUC-Bdi-015029	Brachypodium distachyon	55.56	2.00e-27	115.00
IUUC-Bol-015802	Brassica oleracea	58.88	2.00e-49	188.00
IUUC-Bra-017359	Brassica rapa	56.65	7.00e-41	159.00
IUUC-Hvu-047604	Hordeum vulgare	49.74	8.00e-34	135.00
IUUC-Lpe-050991	Leersia perrieri	54.74	5.00e-35	140.00
IUUC-Mac-064920	Musa acuminata	52.47	3.00e-24	104.00
IUUC-Oba-075352	Oryza barthii	52.91	2.00e-30	124.00
IUUC-Obr-076398	Oryza brachyantha	50.53	2.00e-29	120.00
IUUC-Ogl-077080	Oryza glaberrima	52.91	2.00e-30	124.00
IUUC-Ogu-077991	Oryza glumaepatula	52.91	2.00e-30	124.00
IUUC-Oin-080020	Oryza indica	52.91	1.00e-30	125.00
IUUC-Olo-080906	Oryza longistaminata	52.91	2.00e-30	124.00
IUUC-Ome-081299	Oryza meridionalis	52.91	2.00e-30	124.00
IUUC-Oni-082889	Oryza nivara	52.91	3.00e-30	124.00
IUUC-Opu-084024	Oryza punctata	52.91	1.00e-30	125.00
IUUC-Oru-084432	Oryza rufipogon	52.91	3.00e-30	124.00
IUUC-Osa-085873	Oryza sativa	52.91	3.00e-30	124.00
IUUC-Ppe-101378	Prunus persica	67.29	1.00e-29	123.00
IUUC-Sit-110209	Setaria italica	55.07	2.00e-30	124.00
IUUC-Sly-111309	Solanum lycopersicum	66.30	3.00e-45	174.00
IUUC-Stu-112524	Solanum tuberosum	66.30	4.00e-45	174.00
IUUC-Sbi-114762	Sorghum bicolor	54.68	1.00e-29	121.00
IUUC-Tae-125019	Triticum aestivum	52.72	6.00e-30	123.00
IUUC-Tur-126402	Triticum urartu	52.72	5.00e-30	124.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence