iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028118

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Lysine (K)-specific demethylase 5Ba

Genbank Nucleotide ID

CR628365

Gene Name

kdm5ba

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000057093.7	ENSDART00000135443.2	ENSDARP00000122212.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.60e-17	62.8	279	325

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +ClvCg gg+++  l+ C+ C++ +H  Cl ++   ++p+ + w CpkC 
   Q: 279  ICLVCGGGGDED-RLLLCDGCDDSYHTFCLIPP-LHDVPKGD-WRCPKCL 325
           7*********88.5*******************.*******7.******5 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MTHSRPNEFI PPPECPVFEP SWEEFADPFG FINKIRPIAE NTGICKIRPP PGWQPPFACD 60
VDRLHFTPRI QRLNELEAQT RVKLNFLDQI AKFWELQGCT LKIPHVERKT LDLFVLYKLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTCCGAGT TGACGTGTGG TACGTGCTCG TAGATATTGC TCGCATGGAA TACGACGGTG 60
GATGCTGATG AACCCTCTGC ACCGAGATAT GTAAAGACAA AAGTCGAGCG CGACGCCAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding

KEGG

dre:327168

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002595	Amborella trichopoda	36.55	7.00e-123	436.00
IUUC-Acl-008162	Aspergillus clavatus	31.45	2.00e-117	418.00
IUUC-Ame-011552	Astyanax mexicanus	82.57	0.00e+00	1863.00
IUUC-Bci-013992	Botrytis cinerea	35.62	8.00e-112	399.00
IUUC-Bdi-014050	Brachypodium distachyon	35.71	2.00e-120	428.00
IUUC-Cne-026851	Cryptococcus neoformans	28.45	5.00e-112	400.00
IUUC-Dme-032021	Drosophila melanogaster	42.43	0.00e+00	986.00
IUUC-Eeu-035012	Erinaceus europaeus	56.32	0.00e+00	1263.00
IUUC-Fox-037694	Fusarium oxysporum	32.35	5.00e-99	357.00
IUUC-Gac-041461	Gasterosteus aculeatus	66.27	0.00e+00	1936.00
IUUC-Gma-042675	Glycine max	30.89	3.00e-112	400.00
IUUC-Kpa-049245	Komagataella pastoris	23.20	5.00e-24	107.00
IUUC-Lpe-051537	Leersia perrieri	33.45	4.00e-88	320.00
IUUC-Opr-071002	Ochotona princeps	48.80	0.00e+00	1179.00
IUUC-Ont-071701	Oreochromis niloticus	67.65	0.00e+00	1934.00
IUUC-Oba-075388	Oryza barthii	32.02	1.00e-83	305.00
IUUC-Obr-076296	Oryza brachyantha	38.62	6.00e-86	313.00
IUUC-Ogu-079040	Oryza glumaepatula	27.50	5.00e-84	306.00
IUUC-Ome-081764	Oryza meridionalis	29.90	4.00e-101	363.00
IUUC-Oni-083012	Oryza nivara	31.50	7.00e-83	303.00
IUUC-Opu-083164	Oryza punctata	30.26	6.00e-84	306.00
IUUC-Oru-084630	Oryza rufipogon	32.16	1.00e-82	302.00
IUUC-Pno-094879	Phaeosphaeria nodorum	30.48	8.00e-113	402.00
IUUC-Pfo-096777	Poecilia formosa	66.86	0.00e+00	1922.00
IUUC-Ppe-101504	Prunus persica	32.77	1.00e-99	359.00
IUUC-Sit-110534	Setaria italica	35.55	3.00e-113	404.00
IUUC-Sre-115161	Sporisorium reilianum	28.94	2.00e-124	441.00
IUUC-Tni-119650	Tetraodon nigroviridis	64.77	0.00e+00	1842.00
IUUC-Tca-121478	Theobroma cacao	32.37	1.00e-103	372.00
IUUC-Tvi-122263	Trichoderma virens	33.38	6.00e-101	363.00
IUUC-Tae-125894	Triticum aestivum	35.49	3.00e-109	391.00
IUUC-Uma-129590	Ustilago maydis	29.21	6.00e-127	450.00
IUUC-Xma-133598	Xiphophorus maculatus	66.03	0.00e+00	1905.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence