iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113818

UUCD1 version

UUC-SoB-01513

Ensembl Protein ID

Sb10g010280.1

UniProt Accession

A0A194YIJ4; A0A194YIJ4_SORBI

Genbank Protein ID

KXG19790.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000769

Gene Name

SORBI_010G116300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb10g010280	Sb10g010280.1	Sb10g010280.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.90e-20	72.9	188	264

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.....tcPvtrqplteedlvPnltlrrliqawceens 73
           +++ f Cp+++++M dPv+++sG+tydr++Ie ++++         cPvt+ ++++++l  nl l+++i +w+ +n+
   Q: 188  LYDSFFCPLTNNVMVDPVTAESGVTYDRKAIEDYFDKFTDdsepvICPVTNMEMQSKTLRSNLPLKSTIAEWITRNE 264
           5799*******************************8887778889****************************9997 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSSAASAVDA EHENFMDVGS HLAHHGALPA IDEVQKQAQG SPTNTLQVME YLAANVDLAK 60
DLITRCSAIA QQLMDDDLLG ITEDLDKVIK NISNELNKIP ASTMFDSSRF AESAAISGQL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGTCAG CGGCATCAGC CGTCGATGCT GAGCACGAGA ACTTCATGGA TGTCGGCAGC 60
CACCTCGCTC ACCATGGAGC CCTGCCCGCA ATCGATGAGG TGCAGAAGCA GGCGCAAGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002664	Amborella trichopoda	41.00	0.00e+00	650.00
IUUC-Ath-006596	Arabidopsis thaliana	42.82	0.00e+00	636.00
IUUC-Bdi-014572	Brachypodium distachyon	77.76	0.00e+00	1450.00
IUUC-Bol-016179	Brassica oleracea	43.77	0.00e+00	657.00
IUUC-Bra-017617	Brassica rapa	43.65	0.00e+00	653.00
IUUC-Hvu-047800	Hordeum vulgare	76.33	0.00e+00	1435.00
IUUC-Lpe-050817	Leersia perrieri	78.03	0.00e+00	1513.00
IUUC-Mac-065538	Musa acuminata	47.26	0.00e+00	768.00
IUUC-Oba-075004	Oryza barthii	79.55	0.00e+00	1521.00
IUUC-Obr-076090	Oryza brachyantha	79.56	0.00e+00	1189.00
IUUC-Ogl-077375	Oryza glaberrima	79.55	0.00e+00	1521.00
IUUC-Ogu-078488	Oryza glumaepatula	79.74	0.00e+00	1526.00
IUUC-Oin-079369	Oryza indica	79.75	0.00e+00	1450.00
IUUC-Olo-080901	Oryza longistaminata	79.21	0.00e+00	1269.00
IUUC-Ome-081243	Oryza meridionalis	78.64	0.00e+00	1512.00
IUUC-Oni-082268	Oryza nivara	79.45	0.00e+00	1526.00
IUUC-Opu-083388	Oryza punctata	79.01	0.00e+00	1551.00
IUUC-Oru-084387	Oryza rufipogon	79.45	0.00e+00	1523.00
IUUC-Osa-086255	Oryza sativa	79.23	0.00e+00	1487.00
IUUC-Pop-099123	Populus trichocarpa	41.47	0.00e+00	720.00
IUUC-Ppe-101776	Prunus persica	42.74	0.00e+00	731.00
IUUC-Sit-110322	Setaria italica	86.39	0.00e+00	1615.00
IUUC-Sly-111047	Solanum lycopersicum	41.00	0.00e+00	725.00
IUUC-Stu-112113	Solanum tuberosum	40.63	0.00e+00	702.00
IUUC-Tca-121365	Theobroma cacao	45.21	0.00e+00	804.00
IUUC-Tae-123677	Triticum aestivum	75.86	0.00e+00	1410.00
IUUC-Tur-126161	Triticum urartu	75.35	0.00e+00	1395.00
IUUC-Vvi-131502	Vitis vinifera	47.12	0.00e+00	712.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence