iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	miRNAMap	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-52	172.6	108	138
UBD/Beta-Prp	1.90e-99	333.0	413	646

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDl 30
           Ht++v ++af  ++tll++G+ Dg ++vWD+
   Q: 108  HTAPVASMAFdaTSTLLATGGCDGAVRVWDI 138
           9*********9755****************7 PP

UBD/Beta-Prp

   S: 44   llrslsgheaevtavkfspdgk.ilvtgseDrtikvw...............dlstgkcvhtlkghedsvlslsfspsgdklvsGshdr 116
           ++++ sgh+  v ++++s+ ++ +lvtgs+D t+k+w               dl   +  +t + h++++ sl++sp+++ l++Gs+dr
   Q: 413  CVAQGSGHTHSVGTICCSRLKEsFLVTGSQDCTVKLWplpealpskntasdgDLIPLQAQSTQRCHDKDINSLAVSPNDKLLATGSQDR 501
           678889***********998778**************7776666666555555557788888889************************ PP
   S: 117  tirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvk 205
           t+++w l++ q l  ++sgh++  + v+++p++++l+++s+D+t++lW l+  ++l+t++g h+ sv +++f s g +l+s + dg +k
   Q: 502  TAKLWALPQCQLLG-VFSGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEG-HDASVLKVAFVSRGAQLLSSGSDGLLK 588
           *************9.*********************************************9.*************************** PP
   S: 206  lwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlql 262
           lw ++++ecvrtl +h+d v+ ++ s+ d++ ++g+sD  i +W d++  +     ++
   Q: 589  LWTIKSNECVRTLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWkDVTEAEQAEEQAK 646
           ********************************************88777666555555 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAETAAGLCR FKANYAVERK IEPFYKGGKA QLDQTGRHLF CVCGTKVNIL DVASGDLIRS 60
LEQEDQEDIT AFDLSPDDEV LVTASRALLL AQWAWREGTV ARLWKAIHTA PVASMAFDAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGACTCGCGA CATCATCACA GCGTGTCTTG GAGTACAGAG TAGCACCCTG GCTGTTTCAC 60
GAGGGAGAAA GGCTGCTGAG CTTGGAGGGA AACGCTGCCC TGGGACATGG CCGAGACTGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

rno:287120

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	36.69	3.00e-148	519.00
IUUC-Aml-002376	Ailuropoda melanoleuca	86.64	0.00e+00	1366.00
IUUC-Atr-002486	Amborella trichopoda	39.51	6.00e-165	574.00
IUUC-Apl-003519	Anas platyrhynchos	61.77	0.00e+00	892.00
IUUC-Aca-004363	Anolis carolinensis	55.56	5.00e-148	517.00
IUUC-Aly-006152	Arabidopsis lyrata	35.74	8.00e-150	524.00
IUUC-Ath-006966	Arabidopsis thaliana	35.46	1.00e-147	516.00
IUUC-Ago-007746	Ashbya gossypii	30.43	5.00e-105	375.00
IUUC-Acl-008009	Aspergillus clavatus	29.24	1.00e-104	374.00
IUUC-Afl-008681	Aspergillus flavus	29.78	3.00e-98	353.00
IUUC-Afu-008798	Aspergillus fumigatus	29.05	2.00e-95	343.00
IUUC-Ani-009278	Aspergillus nidulans	28.63	3.00e-100	359.00
IUUC-Ang-009640	Aspergillus niger	30.11	8.00e-104	371.00
IUUC-Aor-010160	Aspergillus oryzae	29.78	2.00e-98	353.00
IUUC-Ate-010320	Aspergillus terreus	29.21	5.00e-106	379.00
IUUC-Ame-010930	Astyanax mexicanus	60.78	5.00e-76	276.00
IUUC-Bgr-012054	Blumeria graminis	28.54	3.00e-102	366.00
IUUC-Bta-012611	Bos taurus	87.83	0.00e+00	1365.00
IUUC-Bci-013797	Botrytis cinerea	30.70	4.00e-112	399.00
IUUC-Bdi-014384	Brachypodium distachyon	39.43	3.00e-166	578.00
IUUC-Bol-015097	Brassica oleracea	36.24	1.00e-148	520.00
IUUC-Bra-017798	Brassica rapa	36.36	1.00e-149	524.00
IUUC-Cel-018664	Caenorhabditis elegans	32.38	3.00e-126	446.00
IUUC-Cja-019092	Callithrix jacchus	88.33	0.00e+00	1419.00
IUUC-Cfa-021040	Canis familiaris	86.23	0.00e+00	1363.00
IUUC-Cpo-022529	Cavia porcellus	89.60	0.00e+00	1407.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	58.02	1.00e-44	171.00
IUUC-Csa-024205	Chlorocebus sabaeus	89.08	0.00e+00	1431.00
IUUC-Cin-025560	Ciona intestinalis	45.89	0.00e+00	721.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	31.71	6.00e-116	412.00
IUUC-Cne-027082	Cryptococcus neoformans	29.78	2.00e-112	400.00
IUUC-Cme-027159	Cyanidioschyzon merolae	25.18	6.00e-33	136.00
IUUC-Dre-028138	Danio rerio	53.70	0.00e+00	880.00
IUUC-Dno-029914	Dasypus novemcinctus	64.54	0.00e+00	795.00
IUUC-Dor-030685	Dipodomys ordii	76.78	0.00e+00	915.00
IUUC-Dse-031429	Dothistroma septosporum	29.63	1.00e-99	358.00
IUUC-Dme-031995	Drosophila melanogaster	31.95	6.00e-120	425.00
IUUC-Ete-033086	Echinops telfairi	90.00	0.00e+00	787.00
IUUC-Eca-034354	Equus caballus	89.74	0.00e+00	1379.00
IUUC-Eeu-034832	Erinaceus europaeus	86.93	0.00e+00	794.00
IUUC-Fca-036136	Felis catus	82.62	0.00e+00	1300.00
IUUC-Fal-036859	Ficedula albicollis	65.45	0.00e+00	1047.00
IUUC-Fox-037863	Fusarium oxysporum	30.78	3.00e-101	363.00
IUUC-Fso-038389	Fusarium solani	30.85	2.00e-113	403.00
IUUC-Gmo-038711	Gadus morhua	57.68	0.00e+00	906.00
IUUC-Ggr-039820	Gaeumannomyces graminis	28.79	2.00e-104	373.00
IUUC-Gga-040263	Gallus gallus	65.55	0.00e+00	1083.00
IUUC-Gac-041291	Gasterosteus aculeatus	61.34	0.00e+00	1037.00
IUUC-Gma-044026	Glycine max	38.59	4.00e-165	575.00
IUUC-Ggo-044693	Gorilla gorilla	89.10	0.00e+00	1401.00
IUUC-Hsa-046048	Homo sapiens	89.35	0.00e+00	1407.00
IUUC-Hvu-047608	Hordeum vulgare	38.97	2.00e-166	579.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	89.47	0.00e+00	1450.00
IUUC-Kpa-049209	Komagataella pastoris	32.28	6.00e-118	418.00
IUUC-Lch-050085	Latimeria chalumnae	62.09	0.00e+00	989.00
IUUC-Lpe-050945	Leersia perrieri	39.12	2.00e-162	566.00
IUUC-Loc-052679	Lepisosteus oculatus	64.38	0.00e+00	1077.00
IUUC-Laf-053685	Loxodonta africana	86.44	0.00e+00	1328.00
IUUC-Mcc-055861	Macaca mulatta	89.08	0.00e+00	1401.00
IUUC-Meu-056820	Macropus eugenii	69.97	0.00e+00	947.00
IUUC-Mor-057234	Magnaporthe oryzae	28.25	2.00e-100	360.00
IUUC-Mpo-057456	Magnaporthe poae	30.45	7.00e-86	311.00
IUUC-Mtr-058122	Medicago truncatula	38.92	1.00e-165	577.00
IUUC-Mla-058980	Melampsora laricipopulina	28.21	9.00e-93	335.00
IUUC-Mga-060080	Meleagris gallopavo	64.56	0.00e+00	1071.00
IUUC-Mvi-060338	Microbotryum violaceum	35.57	1.00e-143	503.00
IUUC-Mmr-060762	Microcebus murinus	89.21	0.00e+00	1386.00
IUUC-Mdo-061975	Monodelphis domestica	73.60	0.00e+00	1138.00
IUUC-Mmu-064038	Mus musculus	95.58	0.00e+00	1486.00
IUUC-Mac-065189	Musa acuminata	36.37	3.00e-161	562.00
IUUC-Mpu-066526	Mustela putorius furo	86.82	0.00e+00	1358.00
IUUC-Mlu-067716	Myotis lucifugus	87.38	0.00e+00	1444.00
IUUC-Nfi-068474	Neosartorya fischeri	30.12	5.00e-99	355.00
IUUC-Ncr-068826	Neurospora crassa	28.77	6.00e-98	352.00
IUUC-Nle-069832	Nomascus leucogenys	89.34	0.00e+00	1434.00
IUUC-Opr-071183	Ochotona princeps	79.67	0.00e+00	1263.00
IUUC-Ont-072371	Oreochromis niloticus	62.27	0.00e+00	1028.00
IUUC-Oan-073491	Ornithorhynchus anatinus	65.04	0.00e+00	930.00
IUUC-Oba-075963	Oryza barthii	38.71	1.00e-164	573.00
IUUC-Obr-076173	Oryza brachyantha	39.52	4.00e-165	575.00
IUUC-Ogl-077692	Oryza glaberrima	38.71	4.00e-165	575.00
IUUC-Ogu-078965	Oryza glumaepatula	38.71	1.00e-164	573.00
IUUC-Oin-079708	Oryza indica	38.71	5.00e-165	575.00
IUUC-Olo-080679	Oryza longistaminata	38.20	6.00e-162	564.00
IUUC-Oni-082960	Oryza nivara	38.59	1.00e-164	573.00
IUUC-Opu-083282	Oryza punctata	38.54	3.00e-157	549.00
IUUC-Oru-085224	Oryza rufipogon	38.71	7.00e-165	574.00
IUUC-Osa-085320	Oryza sativa	38.71	7.00e-165	574.00
IUUC-Ola-086370	Oryzias latipes	58.01	6.00e-132	464.00
IUUC-Olu-087814	Ostreococcus lucimarinus	32.49	2.00e-101	363.00
IUUC-Oga-088458	Otolemur garnettii	87.08	0.00e+00	1447.00
IUUC-Oar-090032	Ovis aries	80.22	0.00e+00	962.00
IUUC-Ptr-090749	Pan troglodytes	88.72	0.00e+00	1392.00
IUUC-Pan-091691	Papio anubis	86.04	0.00e+00	1337.00
IUUC-Psi-093200	Pelodiscus sinensis	65.08	0.00e+00	1065.00
IUUC-Pma-094165	Petromyzon marinus	52.70	0.00e+00	649.00
IUUC-Pno-095048	Phaeosphaeria nodorum	32.11	2.00e-90	327.00
IUUC-Ppa-095336	Physcomitrella patens	40.22	6.00e-163	568.00
IUUC-Pfo-096132	Poecilia formosa	62.20	0.00e+00	990.00
IUUC-Pab-097855	Pongo abelii	88.83	0.00e+00	1427.00
IUUC-Pop-099434	Populus trichocarpa	36.67	5.00e-153	535.00
IUUC-Pca-100232	Procavia capensis	82.67	3.00e-164	572.00
IUUC-Ppe-101665	Prunus persica	36.30	6.00e-157	548.00
IUUC-Pva-102178	Pteropus vampyrus	87.80	0.00e+00	1395.00
IUUC-Pgr-103288	Puccinia graminis	29.25	3.00e-82	300.00
IUUC-Ptt-103808	Puccinia triticina	32.18	2.00e-83	303.00
IUUC-Pte-104205	Pyrenophora teres	30.67	8.00e-106	378.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	29.92	8.00e-96	345.00
IUUC-Sce-106281	Saccharomyces cerevisiae	31.04	3.00e-109	389.00
IUUC-Sha-107378	Sarcophilus harrisii	73.79	0.00e+00	1141.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	34.26	6.00e-122	431.00
IUUC-Spo-108361	Schizosaccharomyces pombe	32.36	4.00e-115	409.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	31.04	8.00e-117	414.00
IUUC-Smo-109257	Selaginella moellendorffii	39.33	8.00e-161	560.00
IUUC-Sit-110258	Setaria italica	37.95	3.00e-167	582.00
IUUC-Sly-111521	Solanum lycopersicum	37.48	1.00e-156	547.00
IUUC-Stu-112718	Solanum tuberosum	47.86	4.00e-35	139.00
IUUC-Sar-113586	Sorex araneus	74.58	6.00e-62	231.00
IUUC-Sbi-114768	Sorghum bicolor	38.43	1.00e-169	590.00
IUUC-Sre-115159	Sporisorium reilianum	33.90	2.00e-93	337.00
IUUC-Ssc-116342	Sus scrofa	66.46	0.00e+00	915.00
IUUC-Tgu-117320	Taeniopygia guttata	64.12	0.00e+00	1009.00
IUUC-Tru-118024	Takifugu rubripes	60.72	0.00e+00	982.00
IUUC-Tni-119971	Tetraodon nigroviridis	60.95	0.00e+00	992.00
IUUC-Tca-121248	Theobroma cacao	37.91	7.00e-160	557.00
IUUC-Tre-122079	Trichoderma reesei	30.61	4.00e-103	369.00
IUUC-Tvi-122554	Trichoderma virens	30.62	4.00e-103	369.00
IUUC-Tae-123552	Triticum aestivum	39.41	4.00e-168	585.00
IUUC-Tur-126436	Triticum urartu	37.66	2.00e-135	476.00
IUUC-Tme-126942	Tuber melanosporum	31.14	6.00e-109	388.00
IUUC-Tbe-128000	Tupaia belangeri	88.20	6.00e-85	308.00
IUUC-Ttr-128964	Tursiops truncatus	86.31	0.00e+00	1379.00
IUUC-Uma-129473	Ustilago maydis	32.57	2.00e-102	367.00
IUUC-Vda-129749	Verticillium dahliae	30.36	9.00e-99	354.00
IUUC-Vvi-131511	Vitis vinifera	38.30	1.00e-159	557.00
IUUC-Xtr-132816	Xenopus tropicalis	56.77	0.00e+00	910.00
IUUC-Xma-133672	Xiphophorus maculatus	62.33	0.00e+00	1027.00
IUUC-Yli-134602	Yarrowia lipolytica	35.73	2.00e-139	489.00
IUUC-Zma-135559	Zea mays	37.38	1.00e-160	560.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence