iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114006

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G127800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g020800	Sb06g020800.1	Sb06g020800.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.70e-30	104.0	288	360

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pee++CpIsl+lM dPvv++sG+ty+r++Iekw++sg++tcP+tr++l+++  +Pn+ ++ li +wce+n++
   Q: 288  PPEELRCPISLQLMYDPVVIASGQTYERACIEKWFDSGNTTCPKTRKQLSQRLRTPNYCIKGLIASWCEQNGV 360
           59***********************************************99999****************986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MERIEVDGDF IAAGNWKLHG ALCNELYTVV REVLDAIPPF ETTRSGCSPG LLALSSLRIS 60
VEKAKDLLQY CSESSKLYLA VTAECVLTKF ENSRQGLLES LHQVEETIPE AVGSKITMIA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGAGAA TTGAGGTGGA CGGGGACTTC ATTGCCGCTG GGAATTGGAA GGTAATCCAC 60
TTGACTTCTC GTTTTTATCG AATGCTAGTG ATGCTAAAGT GTTGGTAAAT TTGGAATTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_06g020800

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000137	Aegilops tauschii	65.97	0.00e+00	876.00
IUUC-Bdi-014255	Brachypodium distachyon	67.38	0.00e+00	896.00
IUUC-Hvu-047784	Hordeum vulgare	65.61	0.00e+00	850.00
IUUC-Lpe-051367	Leersia perrieri	65.64	0.00e+00	923.00
IUUC-Oba-075113	Oryza barthii	65.64	0.00e+00	917.00
IUUC-Obr-076015	Oryza brachyantha	64.45	0.00e+00	913.00
IUUC-Ogl-077487	Oryza glaberrima	65.77	0.00e+00	920.00
IUUC-Ogu-078548	Oryza glumaepatula	65.77	0.00e+00	921.00
IUUC-Oin-079540	Oryza indica	65.77	0.00e+00	921.00
IUUC-Olo-080654	Oryza longistaminata	65.90	0.00e+00	916.00
IUUC-Ome-081838	Oryza meridionalis	62.12	0.00e+00	927.00
IUUC-Oni-082806	Oryza nivara	65.77	0.00e+00	921.00
IUUC-Opu-083802	Oryza punctata	65.60	0.00e+00	914.00
IUUC-Oru-084879	Oryza rufipogon	65.77	0.00e+00	921.00
IUUC-Osa-085564	Oryza sativa	65.77	0.00e+00	921.00
IUUC-Sit-110478	Setaria italica	78.60	0.00e+00	1113.00
IUUC-Tae-123859	Triticum aestivum	66.09	0.00e+00	872.00
IUUC-Tur-126528	Triticum urartu	65.77	0.00e+00	848.00
IUUC-Zma-135629	Zea mays	84.50	0.00e+00	1269.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence