iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-109742

Ensembl Protein ID

Si013356m

UniProt Accession

K3YGI8; K3YGI8_SETIT

Genbank Protein ID

KQL01705.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM003533

Gene Name

LOC101785567; SETIT_013356mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si013356m.g	Si013628m	Si013628m
Si013356m.g	Si013356m	Si013356m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-11	43.6	346	384

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt++v +++   ++  l+sGs Dgti+vW++ tg+++k
   Q: 346  GHTSRVKSISVeiTGQWLASGSCDGTIRVWEVETGRCVK 384
           8*******9999877899*******************97 PP

Organism

Setaria italica

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHSDGEHEL EGDDLSADDT SWSDGVWSED ADEESVSFED SGSGSGSDAD SDEAAAAEES 60
DSSEDEVAPR NTVGDVPLEW YKEEEHIGYD IDGRKIKKRD REGRIEAYLR NADDAKNWRK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCCACA GCGACGGGGA GCACGAGCTC GAGGGCGACG ACCTCTCTGC CGACGACACT 60
TCCTGGAGCG ACGGCGTCTG GTCCGAGGAC GCCGACGAGG TGGGAGAGTT ATTTACGCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sita:101785567

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003141	Amborella trichopoda	64.61	8.00e-161	559.00
IUUC-Afu-009083	Aspergillus fumigatus	41.20	4.00e-117	415.00
IUUC-Ani-009365	Aspergillus nidulans	40.00	2.00e-123	435.00
IUUC-Ang-009796	Aspergillus niger	40.31	7.00e-120	424.00
IUUC-Aor-010015	Aspergillus oryzae	39.35	8.00e-123	434.00
IUUC-Ate-010537	Aspergillus terreus	40.28	8.00e-126	444.00
IUUC-Bol-016099	Brassica oleracea	66.50	0.00e+00	877.00
IUUC-Bra-017174	Brassica rapa	66.40	0.00e+00	884.00
IUUC-Cja-019009	Callithrix jacchus	39.51	2.00e-126	446.00
IUUC-Cfa-020173	Canis familiaris	41.06	4.00e-136	478.00
IUUC-Cpo-021796	Cavia porcellus	43.48	8.00e-146	510.00
IUUC-Cin-025782	Ciona intestinalis	45.16	1.00e-154	539.00
IUUC-Dme-031786	Drosophila melanogaster	43.72	1.00e-154	539.00
IUUC-Fox-037973	Fusarium oxysporum	41.60	2.00e-141	495.00
IUUC-Gmo-039114	Gadus morhua	42.22	5.00e-139	487.00
IUUC-Ggr-039746	Gaeumannomyces graminis	42.07	4.00e-145	508.00
IUUC-Kpa-049221	Komagataella pastoris	39.91	8.00e-132	463.00
IUUC-Loc-051930	Lepisosteus oculatus	47.25	1.00e-165	575.00
IUUC-Laf-053903	Loxodonta africana	41.29	1.00e-130	459.00
IUUC-Mpo-057475	Magnaporthe poae	41.13	4.00e-136	478.00
IUUC-Mvi-060485	Microbotryum violaceum	42.28	1.00e-131	464.00
IUUC-Obr-076799	Oryza brachyantha	87.22	0.00e+00	1134.00
IUUC-Ogl-077134	Oryza glaberrima	87.37	0.00e+00	1102.00
IUUC-Ogu-078655	Oryza glumaepatula	83.85	0.00e+00	1061.00
IUUC-Oin-079654	Oryza indica	87.67	0.00e+00	1086.00
IUUC-Olo-080706	Oryza longistaminata	83.41	0.00e+00	1028.00
IUUC-Opu-083707	Oryza punctata	83.26	0.00e+00	1018.00
IUUC-Oru-084453	Oryza rufipogon	83.41	0.00e+00	1028.00
IUUC-Osa-085811	Oryza sativa	87.37	0.00e+00	1100.00
IUUC-Oga-088015	Otolemur garnettii	43.85	4.00e-153	534.00
IUUC-Ptr-090631	Pan troglodytes	42.35	8.00e-56	210.00
IUUC-Pma-094622	Petromyzon marinus	46.28	6.00e-164	570.00
IUUC-Ppa-095528	Physcomitrella patens	55.14	2.00e-151	528.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.53	6.00e-128	451.00
IUUC-Sbi-113945	Sorghum bicolor	94.13	0.00e+00	1206.00
IUUC-Ssc-115352	Sus scrofa	43.37	8.00e-151	526.00
IUUC-Tre-122229	Trichoderma reesei	42.15	4.00e-128	451.00
IUUC-Tvi-122576	Trichoderma virens	42.39	3.00e-131	462.00
IUUC-Ttr-128514	Tursiops truncatus	41.40	1.00e-92	333.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence