iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	RepTar
RAID2
Post-translational Modifications (PTMs)
CPLM	mUbiSiDa
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/UBX	1.20e-09	39.7	195	270

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/UBX

   S: 3    teqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsgsllve 80
           +e +t+++R+p+G  l r+F +s + + + +++    +++++ + L  +fPrr l+ e   s+l++ g++  ++l ve
   Q: 195  EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSNSFPRRALEVEGG-SSLEDIGITVDTVLNVE 270
           5699******************************.*************************.6********99999875 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MASRGVVGLF LLSALPLLCL ELRRGIPSLG IKDLILLSGR IFLLLALLTL VISVTTSWFN 60
SLKPSQGHLK EGEKENEKRR RLVRERQQEA QGEKASRYIE NVLKPQQEMK LKKLEERFYQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGCACTGCG CCCAGCGAGC CCTCCGCGCC ATGGCTTCTC GTGGCGTCGT GGGCCTTTTC 60
TTGCTCTCTG CTCTCCCTCT CTTGTGTCTG GAGCTCCGGC GCGGGATCCC GAGTCTCGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom
IPR017247--UBXN8

PROSITE

PS50033--UBX

Pfam

PF00789--UBX

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane
GO:0005730--C:nucleolus
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG

mmu:108159

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001073	Aegilops tauschii	43.28	6.00e-08	53.10
IUUC-Aml-002184	Ailuropoda melanoleuca	68.71	8.00e-82	296.00
IUUC-Aly-005427	Arabidopsis lyrata	37.97	2.00e-07	50.80
IUUC-Ath-007023	Arabidopsis thaliana	41.77	5.00e-09	55.80
IUUC-Ame-011207	Astyanax mexicanus	44.94	2.00e-31	129.00
IUUC-Bta-013470	Bos taurus	78.99	2.00e-87	315.00
IUUC-Bdi-014955	Brachypodium distachyon	43.04	4.00e-09	56.20
IUUC-Cja-018892	Callithrix jacchus	68.18	3.00e-75	274.00
IUUC-Cfa-020669	Canis familiaris	76.09	5.00e-77	280.00
IUUC-Cpo-022004	Cavia porcellus	76.84	4.00e-40	155.00
IUUC-Cre-022586	Chlamydomonas reinhardtii	28.00	3.00e-03	36.20
IUUC-Csa-023031	Chlorocebus sabaeus	72.20	1.00e-83	302.00
IUUC-Cho-024725	Choloepus hoffmanni	69.68	5.00e-75	274.00
IUUC-Dre-028375	Danio rerio	40.08	7.00e-41	160.00
IUUC-Dno-029893	Dasypus novemcinctus	68.67	1.00e-85	309.00
IUUC-Ete-032415	Echinops telfairi	66.30	4.00e-76	277.00
IUUC-Eca-033355	Equus caballus	77.09	5.00e-79	287.00
IUUC-Fca-035484	Felis catus	75.81	4.00e-88	317.00
IUUC-Gma-043495	Glycine max	36.78	9.00e-09	55.10
IUUC-Ggo-045614	Gorilla gorilla	76.87	6.00e-37	145.00
IUUC-Hsa-046748	Homo sapiens	73.29	3.00e-92	331.00
IUUC-Hvu-047478	Hordeum vulgare	37.97	4.00e-07	49.70
IUUC-Itr-048043	Ictidomys tridecemlineatus	74.10	8.00e-94	336.00
IUUC-Lpe-050790	Leersia perrieri	44.87	1.00e-11	64.30
IUUC-Loc-052315	Lepisosteus oculatus	44.98	2.00e-45	176.00
IUUC-Laf-053549	Loxodonta africana	74.37	1.00e-82	299.00
IUUC-Mcc-054936	Macaca mulatta	73.29	7.00e-87	313.00
IUUC-Mmr-061208	Microcebus murinus	74.37	1.00e-92	332.00
IUUC-Mdo-062250	Monodelphis domestica	52.87	3.00e-51	195.00
IUUC-Mac-065477	Musa acuminata	41.54	1.00e-06	48.10
IUUC-Mlu-067805	Myotis lucifugus	76.19	5.00e-100	357.00
IUUC-Nle-069024	Nomascus leucogenys	68.64	4.00e-60	223.00
IUUC-Opr-070542	Ochotona princeps	73.19	3.00e-91	328.00
IUUC-Ocu-073802	Oryctolagus cuniculus	73.91	5.00e-92	330.00
IUUC-Oba-075728	Oryza barthii	41.77	1.00e-09	58.50
IUUC-Obr-076105	Oryza brachyantha	40.51	5.00e-09	56.20
IUUC-Ogl-077428	Oryza glaberrima	43.04	1.00e-09	58.50
IUUC-Ogu-078920	Oryza glumaepatula	41.77	9.00e-10	58.50
IUUC-Oin-079876	Oryza indica	41.77	9.00e-10	58.50
IUUC-Olo-080220	Oryza longistaminata	41.77	6.00e-09	56.60
IUUC-Ome-081904	Oryza meridionalis	40.51	2.00e-08	54.30
IUUC-Oni-082433	Oryza nivara	41.77	1.00e-09	58.50
IUUC-Opu-083184	Oryza punctata	42.50	4.00e-10	60.10
IUUC-Oru-084236	Oryza rufipogon	41.77	9.00e-10	58.50
IUUC-Osa-085643	Oryza sativa	41.77	4.00e-10	58.50
IUUC-Olu-087658	Ostreococcus lucimarinus	31.46	1.00e-07	50.80
IUUC-Oar-089387	Ovis aries	78.62	3.00e-82	298.00
IUUC-Pan-091720	Papio anubis	70.96	6.00e-84	303.00
IUUC-Pab-097930	Pongo abelii	65.34	9.00e-74	269.00
IUUC-Pop-098865	Populus trichocarpa	35.23	2.00e-07	50.80
IUUC-Ppe-101824	Prunus persica	35.00	4.00e-07	49.70
IUUC-Pva-102593	Pteropus vampyrus	61.23	3.00e-57	214.00
IUUC-Rno-105965	Rattus norvegicus	85.20	8.00e-118	416.00
IUUC-Sha-107593	Sarcophilus harrisii	54.44	8.00e-49	186.00
IUUC-Sit-109903	Setaria italica	41.77	4.00e-09	56.20
IUUC-Sly-111038	Solanum lycopersicum	37.50	3.00e-07	50.40
IUUC-Sar-113353	Sorex araneus	71.13	8.00e-38	149.00
IUUC-Sbi-114655	Sorghum bicolor	43.75	2.00e-09	57.80
IUUC-Ssc-116351	Sus scrofa	74.01	3.00e-77	281.00
IUUC-Tsy-119093	Tarsius syrichta	70.29	4.00e-63	234.00
IUUC-Tca-121591	Theobroma cacao	40.00	6.00e-07	49.30
IUUC-Tae-125273	Triticum aestivum	43.04	6.00e-10	59.30
IUUC-Tur-126134	Triticum urartu	43.28	4.00e-08	53.50
IUUC-Ttr-129027	Tursiops truncatus	74.24	1.00e-67	249.00
IUUC-Vpa-130457	Vicugna pacos	65.58	8.00e-55	206.00
IUUC-Xtr-132545	Xenopus tropicalis	40.80	5.00e-36	144.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence