iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/UBX	6.00e-09	36.7	194	269

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/UBX

   S: 3    teqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsgsllve 80
           ++ +t+++R+p+G+ l r+F +s + + +++++    +++ + + L ++fPrr+l+     s+l++ g++  ++l ve
   Q: 194  EGVVTVALRCPSGHLLRRRFFKSWNSQVLFDWMM-KIGYHRSLYGLSTSFPRRPLEVGGG-SSLEDIGITVDTVLNVE 269
           5699******************************.***********************99.6*******999999775 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASRGVVGIF LLSALPLLCL ELRRGIPSLG IKDLILLSGR VFLLLALLTI VISVTTSWFS 60
SLKPPQVHPK EGEEENAKRQ KLARERQQEA QGEKASRYIQ NVLKPQQEMK LKKLEERFYQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGACCAGA ACCTCCTCAG GAGCAGTGGA GTTCGTTTAC TGTTGCTGGG CTCTCTTCTC 60
CTTACAGGTA GTGACTTCCT TGGAGAGTGA ATTTTTATTT GCGAGTGGTT ATCAATTGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom
IPR017247--UBXN8

PROSITE

PS50033--UBX

Pfam

PF00789--UBX

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane
GO:0005730--C:nucleolus
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG

rno:290802

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001073	Aegilops tauschii	45.16	2.00e-07	51.60
IUUC-Aml-002184	Ailuropoda melanoleuca	70.14	2.00e-84	305.00
IUUC-Aly-006407	Arabidopsis lyrata	31.15	3.00e-06	46.60
IUUC-Ath-007023	Arabidopsis thaliana	40.51	4.00e-07	49.70
IUUC-Ame-011207	Astyanax mexicanus	45.20	1.00e-34	140.00
IUUC-Bta-013470	Bos taurus	78.55	2.00e-92	331.00
IUUC-Bdi-014955	Brachypodium distachyon	43.04	4.00e-08	53.10
IUUC-Bol-015077	Brassica oleracea	33.75	8.00e-05	42.00
IUUC-Bra-017914	Brassica rapa	29.60	4.00e-05	42.70
IUUC-Cja-018892	Callithrix jacchus	67.86	1.00e-76	278.00
IUUC-Cfa-020669	Canis familiaris	78.18	4.00e-85	307.00
IUUC-Cpo-022004	Cavia porcellus	75.79	4.00e-38	148.00
IUUC-Cre-022586	Chlamydomonas reinhardtii	29.33	1.00e-03	37.70
IUUC-Csa-023031	Chlorocebus sabaeus	71.27	2.00e-86	311.00
IUUC-Cho-024725	Choloepus hoffmanni	70.18	2.00e-80	292.00
IUUC-Dre-028375	Danio rerio	39.20	6.00e-43	167.00
IUUC-Dno-029893	Dasypus novemcinctus	67.34	4.00e-84	304.00
IUUC-Ete-032415	Echinops telfairi	66.18	1.00e-82	299.00
IUUC-Eca-033355	Equus caballus	77.74	2.00e-85	308.00
IUUC-Fca-035484	Felis catus	75.72	3.00e-91	327.00
IUUC-Gma-043495	Glycine max	35.29	2.00e-06	47.80
IUUC-Ggo-045614	Gorilla gorilla	75.37	1.00e-37	148.00
IUUC-Hsa-046748	Homo sapiens	73.82	1.00e-97	348.00
IUUC-Hvu-047478	Hordeum vulgare	36.71	2.00e-06	47.80
IUUC-Itr-048043	Ictidomys tridecemlineatus	74.10	6.00e-95	340.00
IUUC-Lpe-050790	Leersia perrieri	43.59	6.00e-10	58.90
IUUC-Loc-052315	Lepisosteus oculatus	49.05	3.00e-51	195.00
IUUC-Laf-053549	Loxodonta africana	72.83	1.00e-86	312.00
IUUC-Mcc-054936	Macaca mulatta	72.36	4.00e-89	320.00
IUUC-Mmr-061208	Microcebus murinus	75.00	3.00e-98	350.00
IUUC-Mdo-062250	Monodelphis domestica	53.50	8.00e-53	200.00
IUUC-Mmu-063233	Mus musculus	87.36	8.00e-113	399.00
IUUC-Mac-065477	Musa acuminata	41.27	6.00e-05	42.70
IUUC-Mlu-067805	Myotis lucifugus	76.47	3.00e-103	367.00
IUUC-Nle-069024	Nomascus leucogenys	70.06	1.00e-63	235.00
IUUC-Opr-070542	Ochotona princeps	72.36	1.00e-92	332.00
IUUC-Ocu-073802	Oryctolagus cuniculus	72.00	7.00e-93	333.00
IUUC-Oba-075728	Oryza barthii	43.04	1.00e-09	57.80
IUUC-Obr-076105	Oryza brachyantha	45.31	9.00e-09	55.50
IUUC-Ogl-077428	Oryza glaberrima	40.51	1.00e-07	51.20
IUUC-Ogu-078920	Oryza glumaepatula	43.04	1.00e-09	58.20
IUUC-Oin-079876	Oryza indica	43.04	1.00e-09	57.80
IUUC-Ome-081904	Oryza meridionalis	37.97	2.00e-06	47.40
IUUC-Oni-082433	Oryza nivara	43.04	1.00e-09	57.80
IUUC-Opu-083184	Oryza punctata	43.75	3.00e-10	60.50
IUUC-Oru-084236	Oryza rufipogon	43.04	1.00e-09	57.80
IUUC-Osa-085643	Oryza sativa	43.04	8.00e-10	57.80
IUUC-Olu-087658	Ostreococcus lucimarinus	31.03	5.00e-06	45.10
IUUC-Oar-089387	Ovis aries	78.55	2.00e-86	312.00
IUUC-Pan-091720	Papio anubis	70.00	2.00e-86	311.00
IUUC-Pab-097930	Pongo abelii	65.45	2.00e-77	281.00
IUUC-Pop-098865	Populus trichocarpa	36.25	4.00e-06	46.60
IUUC-Ppe-101824	Prunus persica	35.00	1.00e-05	45.10
IUUC-Pva-102593	Pteropus vampyrus	61.09	3.00e-59	221.00
IUUC-Sha-107593	Sarcophilus harrisii	52.38	4.00e-50	191.00
IUUC-Sit-109903	Setaria italica	41.77	1.00e-08	54.30
IUUC-Sly-111038	Solanum lycopersicum	37.50	2.00e-06	47.40
IUUC-Stu-112767	Solanum tuberosum	35.00	1.00e-05	44.70
IUUC-Sar-113353	Sorex araneus	65.79	2.00e-38	150.00
IUUC-Sbi-114655	Sorghum bicolor	43.75	1.00e-08	55.10
IUUC-Ssc-116351	Sus scrofa	74.64	5.00e-81	293.00
IUUC-Tsy-119093	Tarsius syrichta	72.36	1.00e-65	242.00
IUUC-Tae-125273	Triticum aestivum	41.77	2.00e-08	54.30
IUUC-Tur-126134	Triticum urartu	45.16	1.00e-07	51.60
IUUC-Ttr-129027	Tursiops truncatus	64.00	7.00e-72	263.00
IUUC-Vpa-130457	Vicugna pacos	65.45	4.00e-60	224.00
IUUC-Xtr-132545	Xenopus tropicalis	44.40	2.00e-41	162.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence