iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114653

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G256500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g029510	Sb04g029510.1	Sb04g029510.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.20e-17	61.8	363	399

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf....sdtllvsGsdDgtikvWDlrtgvl 35
           H ++vt+l+     s t+l+sGs Dgt+k+WD r++v+
   Q: 363  HDGDVTDLSIsqwmS-TRLASGSKDGTVKIWDDRKQVP 399
           9999***96654365.99**************888876 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MASPSGNPNP NPNPPFEIGK LFRPPNPMPT PTPNTIFPGV AGGPAGPPPP SGPYSYPPVT 60
PPFHRGPYIH YPQDPHAMPR PVVSFPMPNP NLNPNPNANP NAAAPGPNPG ARLMQLLGNS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGATCTGCT CCACTGCCAC CTCCTCTCCC TCTCCCCAGC CGCCTCCCAT GGCGTCTCCG 60
AGCGGAAACC CTAACCCTAA TCCCAACCCA CCATTCGAGA TCGGGAAGCT CTTCAGGCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA

KEGG

sbi:SORBI_04g029510

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000944	Aegilops tauschii	74.80	0.00e+00	1785.00
IUUC-Atr-002815	Amborella trichopoda	57.55	7.00e-179	620.00
IUUC-Aly-005827	Arabidopsis lyrata	49.60	0.00e+00	1016.00
IUUC-Ath-006946	Arabidopsis thaliana	48.40	0.00e+00	1031.00
IUUC-Bdi-014662	Brachypodium distachyon	76.12	0.00e+00	1851.00
IUUC-Bol-015150	Brassica oleracea	49.11	0.00e+00	979.00
IUUC-Bra-017673	Brassica rapa	49.28	0.00e+00	990.00
IUUC-Gma-044374	Glycine max	51.05	0.00e+00	1058.00
IUUC-Hvu-047830	Hordeum vulgare	77.76	0.00e+00	1866.00
IUUC-Lpe-051585	Leersia perrieri	75.85	0.00e+00	1764.00
IUUC-Loc-051778	Lepisosteus oculatus	25.24	5.00e-20	93.20
IUUC-Mtr-057751	Medicago truncatula	66.29	3.00e-173	602.00
IUUC-Mac-064436	Musa acuminata	57.84	0.00e+00	1344.00
IUUC-Oba-075599	Oryza barthii	66.16	0.00e+00	1618.00
IUUC-Obr-076430	Oryza brachyantha	76.67	0.00e+00	1823.00
IUUC-Ogl-077350	Oryza glaberrima	76.89	0.00e+00	1868.00
IUUC-Ogu-079010	Oryza glumaepatula	66.01	0.00e+00	1607.00
IUUC-Oin-079418	Oryza indica	77.89	0.00e+00	1728.00
IUUC-Olo-080844	Oryza longistaminata	74.49	0.00e+00	1701.00
IUUC-Ome-081610	Oryza meridionalis	65.89	0.00e+00	1612.00
IUUC-Oni-082323	Oryza nivara	76.33	0.00e+00	1840.00
IUUC-Opu-084175	Oryza punctata	75.47	0.00e+00	1827.00
IUUC-Oru-084677	Oryza rufipogon	75.72	0.00e+00	1820.00
IUUC-Osa-085798	Oryza sativa	76.89	0.00e+00	1867.00
IUUC-Ppa-095912	Physcomitrella patens	55.12	1.00e-125	444.00
IUUC-Pop-100004	Populus trichocarpa	49.44	0.00e+00	643.00
IUUC-Ppe-101310	Prunus persica	49.37	2.00e-148	519.00
IUUC-Sit-110590	Setaria italica	88.30	0.00e+00	2274.00
IUUC-Sly-111353	Solanum lycopersicum	48.06	0.00e+00	1034.00
IUUC-Tca-121627	Theobroma cacao	52.23	0.00e+00	1152.00
IUUC-Tae-125495	Triticum aestivum	75.84	0.00e+00	1904.00
IUUC-Tur-126066	Triticum urartu	76.07	0.00e+00	1700.00
IUUC-Vvi-131361	Vitis vinifera	71.36	0.00e+00	660.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence