iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114351

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G228100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g027250	Sb04g027250.1	Sb04g027250.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.50e-07	30.6	45	93

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw....pglknssskefrCPlCr 46
           C iCle   + p+v+ CgH+++  C++ w         +ss + +CP+C+
   Q: 45   CNICLECATE-PVVTLCGHLYCWPCIYEWlrpdAEADAMSSARRQCPVCK 93
           99****8888.999*****************996666669*********7 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDQTRTGGAG EQPRGAPGEE PAKRVIGADA PAAAAGESGF DCFDCNICLE CATEPVVTLC 60
GHLYCWPCIY EWLRPDAEAD AMSSARRQCP VCKAAVSPDA LGPLYGRGGS SSSAKKPPPR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATCAGA CGCGCACGGG CGGTGCCGGT GAGCAGCCCA GGGGGGCTCC CGGCGAGGAA 60
CCGGCGAAGA GGGTCATCGG CGCAGACGCG CCCGCGGCGG CGGCGGGGGA GTCTGGCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_04g027250

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Pte-104163	Pyrenophora teres	36.07	7.00e-08	50.10
IUUC-Pyt-104640	Pyrenophora triticirepentis	29.70	3.00e-09	54.70
IUUC-Sit-110015	Setaria italica	75.41	3.00e-67	247.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence