iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006761

UUCD1 version

UUC-ArT-00496

Ensembl Protein ID

AT3G18930.1

UniProt Accession

Q67YI6; Q9LJ73; ATL65_ARATH

Genbank Protein ID

BAB01689.1; AEE76169.1; AEE76170.1; ANM65228.1; AAM13984.1; AAM67453.1; AAM97117.1; AAP37865.1; BAD43360.1; BAD44245.1

Protein Name

RING-H2 finger protein ATL65; RING-type E3 ubiquitin transferase ATL65

Genbank Nucleotide ID

AP000735; CP002686; CP002686; CP002686; AY090932; AY122920; AY136452; BT008506; AK175597; AK176482

Gene Name

ATL65; At3g18930; K13E13.2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G18930	AT3G18930.1	AT3G18930.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.90e-07	31.4	156	198

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl +f++g  +++lp C H+fh++C+  w       + + +CPlCr
   Q: 156  CAVCLLEFEEGdyVRTLPlCFHAFHLECIDEW------LRSHPNCPLCR 198
           ********66666999****************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRFVAPPPRS GDNSPSPSPS SGISEEILSR SSDPPLEFSP PLIAMVVVLA AAFLFVTYSR 60
LISRRFLSPL FRRFRRWRCR RRRLLHLSSA SSASTSSSDL RSFSPFPFDS FHYSSYSPYG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAGATATTT GAAGTGACTT GAAGTAAAAA TGTGTTAAAA CTAAGTTGAA ATTTTATACT 60
TCATTACATC ACCAAAAAAG GATAAATTCT AGTTCAGTGG ATGAGCAGCC AGTATGAACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G18930

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002525	Amborella trichopoda	45.57	3.00e-47	181.00
IUUC-Aly-005738	Arabidopsis lyrata	95.16	7.00e-162	562.00
IUUC-Bdi-014398	Brachypodium distachyon	38.75	2.00e-21	96.30
IUUC-Bol-015520	Brassica oleracea	80.86	5.00e-115	406.00
IUUC-Bra-017477	Brassica rapa	80.53	1.00e-113	402.00
IUUC-Gma-043732	Glycine max	50.12	3.00e-63	234.00
IUUC-Lpe-051662	Leersia perrieri	50.60	1.00e-18	86.70
IUUC-Mtr-058344	Medicago truncatula	49.23	6.00e-67	247.00
IUUC-Mac-065095	Musa acuminata	59.49	3.00e-24	104.00
IUUC-Ogu-077985	Oryza glumaepatula	51.09	5.00e-19	88.20
IUUC-Oin-079093	Oryza indica	51.09	1.00e-16	80.10
IUUC-Opu-083940	Oryza punctata	51.09	7.00e-17	81.30
IUUC-Oru-084986	Oryza rufipogon	39.13	2.00e-09	56.60
IUUC-Pop-099495	Populus trichocarpa	46.90	4.00e-61	228.00
IUUC-Ppe-101726	Prunus persica	51.13	1.00e-68	253.00
IUUC-Sit-109801	Setaria italica	32.45	4.00e-18	85.50
IUUC-Sly-111253	Solanum lycopersicum	50.61	8.00e-56	209.00
IUUC-Stu-112012	Solanum tuberosum	50.46	6.00e-55	207.00
IUUC-Sbi-114003	Sorghum bicolor	32.05	2.00e-19	89.70
IUUC-Tca-120931	Theobroma cacao	53.75	3.00e-79	288.00
IUUC-Tae-123946	Triticum aestivum	41.24	3.00e-21	95.10
IUUC-Vvi-131492	Vitis vinifera	51.06	5.00e-69	254.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence