iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005472

Ensembl Protein ID

scaffold_203017.1

UniProt Accession

D7KX52; D7KX52_ARALL

Genbank Protein ID

EFH64084.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348714

Gene Name

TPR1; ARALYDRAFT_895943

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_203017.1	scaffold_203017.1	scaffold_203017.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-21	75.9	461	499
UBD/Beta-Prp	5.60e-47	161.0	394	629

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvs.GsdDgtikvWDlrtgvll 36
           H ++v+++af  ++  l v+ ++dD+tikvWD  tgv+ 
   Q: 461  HVGGVNDIAFstPNkQLCVTtCGDDKTIKVWDAATGVKR 499
           99********99775665557***********9999875 PP

UBD/Beta-Prp

   S: 74   rtikvwdlstgkcvhtlkghedsvls...lsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllv.sGslD 158
           +t kvwdls++++       ++ v+s   + +sp+g+ + ++ +  +++++  + g+ +++   +++   gv+ ++ + p+++l+v ++++D
   Q: 394  KTFKVWDLSKCSMPLQAALVKEPVVSvnrVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQhleIDAHVGGVNDIAFSTPNKQLCVtTCGDD 485
           588******999988888888888885557799********************9999999988677777777777777777766662799** PP
   S: 159  rtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs..sDgsi 246
           +t+++Wd +tg   +t++g h+ +vys+   +++n +++ s +ldg++k w + +    + +++  ++ + ++ s +++rl s++  +Dg  
   Q: 486  KTIKVWDAATGVKRHTFEG-HEAPVYSICphYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGtsKDGES 576
           ******************9.********98899999******************9999*************************988899999 PP
   S: 247  ri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkn 297
           +i  W+   g + +t+q+ ++++  v  ++ ++n ++++++d ++++w+++++
   Q: 577  FIveWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTI 629
           9899****************999988888********************9876 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVERYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVEILVKD LKVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGTGAGTG AAGAAATATT ATCATGTCTT CTCTGAGCAG AGAGCTCGTG TTCTTGATCT 60
TACAGTTTTT AGATGAAGAG AAGTTCAAAG AGACTGTTCA TAAGTAAGTC CTCTTTCCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0010072--P:primary shoot apical meristem specification
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

aly:ARALYDRAFT_895943

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	77.02	0.00e+00	1779.00
IUUC-Ath-007640	Arabidopsis thaliana	98.39	0.00e+00	2185.00
IUUC-Bdi-014914	Brachypodium distachyon	76.82	0.00e+00	1753.00
IUUC-Bol-016225	Brassica oleracea	96.10	0.00e+00	2166.00
IUUC-Bra-017496	Brassica rapa	96.33	0.00e+00	2142.00
IUUC-Gma-043911	Glycine max	84.61	0.00e+00	1917.00
IUUC-Hvu-047688	Hordeum vulgare	77.99	0.00e+00	1694.00
IUUC-Lpe-051514	Leersia perrieri	75.53	0.00e+00	1679.00
IUUC-Mtr-058037	Medicago truncatula	82.70	0.00e+00	1892.00
IUUC-Mac-065382	Musa acuminata	77.82	0.00e+00	1792.00
IUUC-Oba-075912	Oryza barthii	77.98	0.00e+00	1761.00
IUUC-Obr-076921	Oryza brachyantha	77.67	0.00e+00	1758.00
IUUC-Ogl-077334	Oryza glaberrima	77.78	0.00e+00	1769.00
IUUC-Ogu-078494	Oryza glumaepatula	77.78	0.00e+00	1769.00
IUUC-Oin-079720	Oryza indica	76.40	0.00e+00	1760.00
IUUC-Olo-081034	Oryza longistaminata	77.19	0.00e+00	1754.00
IUUC-Ome-081778	Oryza meridionalis	77.69	0.00e+00	1770.00
IUUC-Oni-082412	Oryza nivara	77.98	0.00e+00	1760.00
IUUC-Opu-083406	Oryza punctata	76.25	0.00e+00	1707.00
IUUC-Oru-084328	Oryza rufipogon	77.86	0.00e+00	1761.00
IUUC-Osa-085765	Oryza sativa	77.78	0.00e+00	1769.00
IUUC-Ppa-095814	Physcomitrella patens	68.27	0.00e+00	1538.00
IUUC-Pop-098876	Populus trichocarpa	83.12	0.00e+00	1905.00
IUUC-Ppe-101370	Prunus persica	84.86	0.00e+00	1975.00
IUUC-Smo-109617	Selaginella moellendorffii	68.85	0.00e+00	1506.00
IUUC-Sit-110288	Setaria italica	77.42	0.00e+00	1751.00
IUUC-Sbi-114078	Sorghum bicolor	77.89	0.00e+00	1758.00
IUUC-Tca-121628	Theobroma cacao	84.37	0.00e+00	1929.00
IUUC-Tae-125600	Triticum aestivum	77.34	0.00e+00	1782.00
IUUC-Tur-126412	Triticum urartu	78.18	0.00e+00	1785.00
IUUC-Vvi-131079	Vitis vinifera	82.92	0.00e+00	1910.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence