iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Oga-088364

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAQR03171103

Gene Name

RBBP4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOGAG00000011632.2	ENSOGAT00000011637.2	ENSOGAP00000010411.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.50e-37	124.8	274	308

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++v+cl+f   s+ +l++Gs D+t+ +WDlr  
   Q: 274  HTAEVNCLSFnpySEFILATGSADKTVALWDLRNL 308
           **********96554568*************9875 PP

Organism

Otolemur garnettii

Protein Sequence
(Fasta)

MADKEAAFDD AVEERVINEE YKIWKKNTPF LYDLVMTHAL EWPSLTAQWL PDVTSRPRPG 60
SNPPALVYVA GTLLTELQNY VMVFSLKNPP PHTYHSGTHE DSQQREFGGF GSVSGKIEIE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAGGCCGCG CGCGCGGAGC GAGCGCCCGT AGGCTCGCAG CCCCCCTCCC GCAACGCTCG 60
ACCCTGGGAT CACCCTCGCC GCTTGCTTGC CCGCCATGGC CGACAAGGAA GGTAAGTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005829--C:cytosol
GO:0035098--C:ESC/E(Z) complex
GO:0000790--C:nuclear chromatin
GO:0016581--C:NuRD complex
GO:0016589--C:NURF complex
GO:0008094--F:DNA-dependent ATPase activity
GO:0031492--F:nucleosomal DNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980--F:RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0006335--P:DNA replication-dependent nucleosome assembly
GO:0006336--P:DNA replication-independent nucleosome assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000757	Aegilops tauschii	58.94	7.00e-136	476.00
IUUC-Aml-001339	Ailuropoda melanoleuca	90.28	0.00e+00	768.00
IUUC-Atr-003075	Amborella trichopoda	62.98	2.00e-155	541.00
IUUC-Apl-003952	Anas platyrhynchos	91.00	0.00e+00	781.00
IUUC-Aca-004508	Anolis carolinensis	89.93	0.00e+00	783.00
IUUC-Aly-006342	Arabidopsis lyrata	64.52	4.00e-152	530.00
IUUC-Ath-006855	Arabidopsis thaliana	64.76	1.00e-152	532.00
IUUC-Ago-007892	Ashbya gossypii	36.78	1.00e-73	270.00
IUUC-Acl-008163	Aspergillus clavatus	48.99	2.00e-113	402.00
IUUC-Afl-008645	Aspergillus flavus	48.51	1.00e-111	396.00
IUUC-Afu-009091	Aspergillus fumigatus	48.99	3.00e-113	402.00
IUUC-Ani-009478	Aspergillus nidulans	44.22	4.00e-92	331.00
IUUC-Ang-009707	Aspergillus niger	48.49	7.00e-109	387.00
IUUC-Aor-010028	Aspergillus oryzae	48.51	1.00e-111	396.00
IUUC-Ate-010416	Aspergillus terreus	47.46	2.00e-112	399.00
IUUC-Ame-010598	Astyanax mexicanus	88.50	0.00e+00	771.00
IUUC-Bgr-012001	Blumeria graminis	46.60	5.00e-96	344.00
IUUC-Bta-012851	Bos taurus	91.10	0.00e+00	791.00
IUUC-Bci-013815	Botrytis cinerea	46.79	3.00e-113	401.00
IUUC-Bdi-014926	Brachypodium distachyon	63.08	4.00e-148	517.00
IUUC-Bol-015856	Brassica oleracea	64.37	2.00e-151	529.00
IUUC-Bra-016725	Brassica rapa	59.91	2.00e-149	522.00
IUUC-Cel-018587	Caenorhabditis elegans	66.59	2.00e-165	575.00
IUUC-Cja-019884	Callithrix jacchus	91.10	0.00e+00	791.00
IUUC-Cfa-020343	Canis familiaris	91.10	0.00e+00	791.00
IUUC-Cpo-021591	Cavia porcellus	91.10	0.00e+00	791.00
IUUC-Cre-022563	Chlamydomonas reinhardtii	58.31	2.00e-144	505.00
IUUC-Cho-024506	Choloepus hoffmanni	90.63	0.00e+00	783.00
IUUC-Cin-025589	Ciona intestinalis	81.73	0.00e+00	723.00
IUUC-Csv-026216	Ciona savignyi	82.38	0.00e+00	725.00
IUUC-Cgl-026564	Colletotrichum gloeosporioides	45.06	6.00e-106	377.00
IUUC-Cne-026792	Cryptococcus neoformans	51.63	1.00e-122	432.00
IUUC-Cme-027307	Cyanidioschyzon merolae	50.35	3.00e-121	428.00
IUUC-Dre-028742	Danio rerio	88.73	0.00e+00	772.00
IUUC-Dno-029114	Dasypus novemcinctus	91.10	0.00e+00	791.00
IUUC-Dse-031282	Dothistroma septosporum	44.33	1.00e-93	337.00
IUUC-Dme-032126	Drosophila melanogaster	84.67	0.00e+00	730.00
IUUC-Ete-032731	Echinops telfairi	91.10	0.00e+00	791.00
IUUC-Eca-033533	Equus caballus	89.57	0.00e+00	763.00
IUUC-Fca-036202	Felis catus	91.10	0.00e+00	791.00
IUUC-Fal-037084	Ficedula albicollis	91.00	0.00e+00	781.00
IUUC-Fox-037974	Fusarium oxysporum	45.05	2.00e-107	382.00
IUUC-Fso-038246	Fusarium solani	44.22	9.00e-97	347.00
IUUC-Gmo-039214	Gadus morhua	88.92	0.00e+00	764.00
IUUC-Ggr-039741	Gaeumannomyces graminis	47.72	9.00e-109	387.00
IUUC-Gga-040396	Gallus gallus	91.10	0.00e+00	791.00
IUUC-Gac-041389	Gasterosteus aculeatus	87.79	0.00e+00	758.00
IUUC-Gma-042791	Glycine max	63.84	3.00e-149	521.00
IUUC-Ggo-045422	Gorilla gorilla	82.94	0.00e+00	702.00
IUUC-Hsa-045683	Homo sapiens	91.10	0.00e+00	791.00
IUUC-Hvu-047457	Hordeum vulgare	67.18	3.00e-76	277.00
IUUC-Itr-047950	Ictidomys tridecemlineatus	91.10	0.00e+00	791.00
IUUC-Kpa-049119	Komagataella pastoris	35.19	6.00e-67	248.00
IUUC-Lch-050545	Latimeria chalumnae	85.41	0.00e+00	740.00
IUUC-Lpe-051337	Leersia perrieri	63.66	4.00e-149	520.00
IUUC-Loc-052473	Lepisosteus oculatus	89.20	0.00e+00	777.00
IUUC-Laf-054114	Loxodonta africana	91.10	0.00e+00	791.00
IUUC-Mcc-055648	Macaca mulatta	90.87	0.00e+00	785.00
IUUC-Meu-056490	Macropus eugenii	91.10	0.00e+00	791.00
IUUC-Mor-056947	Magnaporthe oryzae	46.76	7.00e-106	377.00
IUUC-Mpo-057602	Magnaporthe poae	47.00	1.00e-108	386.00
IUUC-Mtr-057853	Medicago truncatula	62.38	3.00e-146	511.00
IUUC-Mla-058884	Melampsora laricipopulina	49.64	4.00e-116	410.00
IUUC-Mga-059452	Meleagris gallopavo	91.00	0.00e+00	781.00
IUUC-Mvi-060450	Microbotryum violaceum	53.62	1.00e-121	429.00
IUUC-Mmr-060678	Microcebus murinus	90.39	0.00e+00	743.00
IUUC-Mdo-062450	Monodelphis domestica	90.20	0.00e+00	750.00
IUUC-Mmu-063282	Mus musculus	91.10	0.00e+00	791.00
IUUC-Mac-065480	Musa acuminata	62.28	2.00e-145	508.00
IUUC-Mpu-066529	Mustela putorius furo	90.16	0.00e+00	783.00
IUUC-Mlu-068072	Myotis lucifugus	91.10	0.00e+00	791.00
IUUC-Nfi-068374	Neosartorya fischeri	48.99	5.00e-110	391.00
IUUC-Ncr-068794	Neurospora crassa	44.44	8.00e-103	367.00
IUUC-Nle-069577	Nomascus leucogenys	91.10	0.00e+00	791.00
IUUC-Opr-070245	Ochotona princeps	75.64	3.00e-176	611.00
IUUC-Ont-071809	Oreochromis niloticus	88.26	0.00e+00	770.00
IUUC-Oan-072839	Ornithorhynchus anatinus	91.23	0.00e+00	786.00
IUUC-Ocu-074515	Oryctolagus cuniculus	86.18	0.00e+00	689.00
IUUC-Oba-075719	Oryza barthii	56.00	3.00e-131	462.00
IUUC-Obr-076859	Oryza brachyantha	63.50	1.00e-147	516.00
IUUC-Ogl-077920	Oryza glaberrima	63.41	4.00e-149	521.00
IUUC-Ogu-078048	Oryza glumaepatula	56.00	2.00e-130	459.00
IUUC-Oin-079960	Oryza indica	62.02	7.00e-120	424.00
IUUC-Olo-080553	Oryza longistaminata	53.72	8.00e-127	447.00
IUUC-Ome-081835	Oryza meridionalis	63.41	1.00e-149	523.00
IUUC-Oni-082494	Oryza nivara	55.76	2.00e-129	456.00
IUUC-Opu-083913	Oryza punctata	60.73	5.00e-138	484.00
IUUC-Oru-084666	Oryza rufipogon	63.41	4.00e-149	521.00
IUUC-Osa-085884	Oryza sativa	63.41	4.00e-149	521.00
IUUC-Ola-086664	Oryzias latipes	88.06	0.00e+00	764.00
IUUC-Olu-087579	Ostreococcus lucimarinus	60.15	9.00e-136	476.00
IUUC-Oar-089652	Ovis aries	91.10	0.00e+00	791.00
IUUC-Psi-093300	Pelodiscus sinensis	90.31	0.00e+00	719.00
IUUC-Pma-094307	Petromyzon marinus	85.24	0.00e+00	738.00
IUUC-Pno-095153	Phaeosphaeria nodorum	45.37	7.00e-99	353.00
IUUC-Ppa-095800	Physcomitrella patens	63.18	3.00e-154	538.00
IUUC-Pfo-097376	Poecilia formosa	88.06	0.00e+00	765.00
IUUC-Pab-097697	Pongo abelii	91.10	0.00e+00	791.00
IUUC-Pop-099709	Populus trichocarpa	61.54	7.00e-152	530.00
IUUC-Pca-100642	Procavia capensis	80.54	0.00e+00	650.00
IUUC-Ppe-101212	Prunus persica	62.53	2.00e-150	525.00
IUUC-Pva-102253	Pteropus vampyrus	91.10	0.00e+00	791.00
IUUC-Pgr-103441	Puccinia graminis	51.53	8.00e-114	403.00
IUUC-Pte-104332	Pyrenophora teres	46.06	8.00e-102	363.00
IUUC-Pyt-104516	Pyrenophora triticirepentis	46.06	8.00e-102	363.00
IUUC-Rno-105678	Rattus norvegicus	91.10	0.00e+00	791.00
IUUC-Sce-106364	Saccharomyces cerevisiae	35.28	1.00e-65	243.00
IUUC-Sha-106663	Sarcophilus harrisii	91.00	0.00e+00	781.00
IUUC-Sja-108001	Schizosaccharomyces japonicus	46.40	2.00e-98	352.00
IUUC-Spo-108145	Schizosaccharomyces pombe	49.00	4.00e-109	388.00
IUUC-Smo-109159	Selaginella moellendorffii	60.29	9.00e-149	519.00
IUUC-Sit-110144	Setaria italica	63.43	2.00e-145	508.00
IUUC-Sly-111680	Solanum lycopersicum	62.35	8.00e-152	530.00
IUUC-Stu-111931	Solanum tuberosum	62.08	2.00e-150	525.00
IUUC-Sbi-114637	Sorghum bicolor	63.18	3.00e-148	518.00
IUUC-Sre-114980	Sporisorium reilianum	49.31	6.00e-122	430.00
IUUC-Ssc-115711	Sus scrofa	90.31	0.00e+00	719.00
IUUC-Tgu-116925	Taeniopygia guttata	90.76	0.00e+00	780.00
IUUC-Tru-117549	Takifugu rubripes	87.62	0.00e+00	760.00
IUUC-Tni-120398	Tetraodon nigroviridis	87.62	0.00e+00	763.00
IUUC-Tca-121841	Theobroma cacao	64.68	4.00e-152	530.00
IUUC-Tre-122190	Trichoderma reesei	45.45	6.00e-100	357.00
IUUC-Tvi-122304	Trichoderma virens	44.81	2.00e-108	385.00
IUUC-Tae-124648	Triticum aestivum	62.44	1.00e-144	505.00
IUUC-Tur-126850	Triticum urartu	63.55	3.00e-117	414.00
IUUC-Tme-126949	Tuber melanosporum	51.37	9.00e-118	416.00
IUUC-Uma-129424	Ustilago maydis	49.31	1.00e-122	432.00
IUUC-Vda-129873	Verticillium dahliae	46.30	2.00e-111	395.00
IUUC-Vpa-130079	Vicugna pacos	90.63	0.00e+00	786.00
IUUC-Vvi-131585	Vitis vinifera	63.18	2.00e-149	521.00
IUUC-Xma-133066	Xiphophorus maculatus	88.26	0.00e+00	770.00
IUUC-Yli-134334	Yarrowia lipolytica	39.68	2.00e-80	292.00
IUUC-Zma-135710	Zea mays	62.69	2.00e-145	509.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence