iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006738

UUCD1 version

UUC-ArT-00884

Ensembl Protein ID

AT5G56340.1

UniProt Accession

Q9FM98; Q9FM98_ARATH

Genbank Protein ID

AAL36261.1; AAM14133.1; AED96751.1; BAB11261.1

Protein Name

Putative uncharacterized protein; Putative uncharacterized protein At5g56340; RING/U-box superfamily protein

Genbank Nucleotide ID

AY063905; AY091194; CP002688; AB009049

Gene Name

ATCRT1; MCD7.7; MCD7_7; At5g56340

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G56340	AT5G56340.1	AT5G56340.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.80e-06	27.6	259	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+df++g   + +pC+H fh  C+  w         + +CP+Cr
   Q: 259  CSVCLDDFEKGteAKEMPCKHKFHVRCIVPW------LELHSSCPVCR 300
           ********7773356699*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD 60
FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG DDLTTNADGN GNDSNNSNNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGAAAAGGA CATAAAGTAA GAGGAAACAA GGAACGAGTT GGGGGGTTAG AAGAGGACGT 60
GGTTGGGTTG TTTTCTTTTG TTTTGTTTCC TTCCACTCTT TCTTCTTCTT CATTTCCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G56340

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006367	Arabidopsis lyrata	89.59	2.00e-168	584.00
IUUC-Ago-007829	Ashbya gossypii	43.55	5.00e-10	57.80
IUUC-Bol-016413	Brassica oleracea	77.29	3.00e-117	415.00
IUUC-Bra-016653	Brassica rapa	75.35	4.00e-123	434.00
IUUC-Gma-044146	Glycine max	52.69	2.00e-88	318.00
IUUC-Mtr-058295	Medicago truncatula	56.84	1.00e-91	328.00
IUUC-Oin-079349	Oryza indica	60.00	6.00e-46	177.00
IUUC-Osa-085947	Oryza sativa	60.00	6.00e-46	177.00
IUUC-Pop-098858	Populus trichocarpa	54.16	4.00e-90	324.00
IUUC-Ppe-101941	Prunus persica	59.81	7.00e-87	313.00
IUUC-Sit-110378	Setaria italica	50.38	4.00e-29	121.00
IUUC-Sly-110912	Solanum lycopersicum	59.57	3.00e-59	221.00
IUUC-Tca-121112	Theobroma cacao	56.12	1.00e-85	309.00
IUUC-Tae-123713	Triticum aestivum	43.01	6.00e-39	153.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence