iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111196

Ensembl Protein ID

Solyc09g018520.1.1

UniProt Accession

K4CSB5; K4CSB5_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc09g018520.1	Solyc09g018520.1.1	Solyc09g018520.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-06	28.0	72	101

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvW 28
           gH+ +v+c++  sd +llvsGs D+++k+W
   Q: 72   GHKLPVFCMNTsSDgDLLVSGSTDKNVKIW 101
           7999******99999*************** PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MNYDVLIVAV SPDGKNVVVS LSDNTINVVF LHRIRVNSLF SIGSYLDLIL MTSICFQVFY 60
MDSLKFFVFL YGHKLPVFCM NTSSDGDLLV SGSTDKNVKI WVLVLGIFIS HFLCSFMGVK 120

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Nucleotide Sequence
(Fasta)

ATGAATTATG ATGTTCTAAT CGTAGCTGTG AGCCCTGATG GTAAAAATGT TGTTGTTTCT 60
TTGTCGGACA ACACAATAAA TGTTGTTTTT CTTCATCGTA TTCGAGTGAA TTCTCTATTT 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR011047--Quinoprotein_ADH-like_supfam
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence